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Report for CCDS33930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33930.1 Public Homo sapiens 3 RPL35A 24 110 108 CCDS HistoryNCBI Gene:6165Re-query CCDS DB by CCDS ID:33930.1Re-query CCDS DB by GeneID:6165See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33930.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448864.6 ENSP00000393393.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448864.6Link to Ensembl Protein Viewer:ENSP00000393393.1Re-query CCDS DB by Nucleotide ID:ENST00000448864Re-query CCDS DB by Protein ID:ENSP00000393393
Original member Current member EBI ENST00000647248.2 ENSP00000495672.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000647248.2Link to Ensembl Protein Viewer:ENSP00000495672.1Re-query CCDS DB by Nucleotide ID:ENST00000647248Re-query CCDS DB by Protein ID:ENSP00000495672
Original member Current member NCBI NM_000996.4 NP_000987.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000996.4Link to Protein Sequence:NP_000987.2Re-query CCDS DB by Nucleotide ID:NM_000996Re-query CCDS DB by Protein ID:NP_000987Link to BLAST:NP_000987.2
Original member Current member NCBI NM_001316311.2 NP_001303240.1 Accepted alive Link to Nucleotide Sequence:NM_001316311.2Link to Protein Sequence:NP_001303240.1Re-query CCDS DB by Nucleotide ID:NM_001316311Re-query CCDS DB by Protein ID:NP_001303240Link to BLAST:NP_001303240.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000987.2 110 P18077 110 100% 0 0
NP_001303240.1 110 P18077 110 100% 0 0

Chromosomal Locations for CCDS 33930.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 197950968 197950978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197951159 197951311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197954003 197954147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197955750 197955773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGTCTGGAAGGCTGTGGTCCAAGGCCATTTTTGCTGGCTATAAGCGGGGTCTCCGGAACCAAAGGGAGC
ACACAGCTCTTCTTAAAATTGAAGGTGTTTACGCCCGAGATGAAACAGAATTCTATTTGGGCAAGAGATG
CGCTTATGTATATAAAGCAAAGAACAACACAGTCACTCCTGGCGGCAAACCAAACAAAACCAGAGTCATC
TGGGGAAAAGTAACTCGGGCCCATGGAAACAGTGGCATGGTTCGTGCCAAATTCCGAAGCAATCTTCCTG
CTAAGGCCATTGGACACAGAATCCGAGTGATGCTGTACCCCTCAAGGATTTAA

Translation (110 aa):
MSGRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVI
WGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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