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Report for CCDS33847.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33847.2 Public Homo sapiens 3 PLXNA1 24 110 108 CCDS HistoryNCBI Gene:5361Re-query CCDS DB by CCDS ID:33847.2Re-query CCDS DB by GeneID:5361See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 33847.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available conservation data and protein homology data in mouse. The update adds a predicted signal peptide to the protein.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 33847.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393409.3 ENSP00000377061.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393409.3Link to Ensembl Protein Viewer:ENSP00000377061.2Re-query CCDS DB by Nucleotide ID:ENST00000393409Re-query CCDS DB by Protein ID:ENSP00000377061
Original member Current member NCBI NM_032242.4 NP_115618.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032242.4Link to Protein Sequence:NP_115618.3Re-query CCDS DB by Nucleotide ID:NM_032242Re-query CCDS DB by Protein ID:NP_115618Link to BLAST:NP_115618.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115618.3 1896 Q9UIW2 1896 100% 0 0

Chromosomal Locations for CCDS 33847.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 126988594 126989787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126991384 126991566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127003330 127003470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127004611 127004711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127004885 127005008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127005090 127005243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127006079 127006178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127007799 127007913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127011958 127012158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127014020 127014116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127014182 127014375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127014478 127014629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127014711 127014831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127015184 127015320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127016517 127016684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127016944 127017037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127017425 127017664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127017749 127017892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127018294 127018528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127020202 127020344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127022085 127022341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127022752 127022818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127027940 127028086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127028181 127028340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127028993 127029096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127029440 127029536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127029874 127030064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127030243 127030412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127032387 127032599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127032686 127032836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127033922 127034017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5691 nt):
ATGCCGCTGCCACCGCGGAGCCTGCAGGTGCTCCTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCCGGGCA
TGTGGGCTGAGGCAGGCTTGCCCAGGGCAGGCGGGGGTTCACAGCCCCCCTTCCGCACCTTCTCGGCCAG
CGACTGGGGCCTCACCCACCTAGTGGTGCATGAGCAGACAGGCGAGGTGTATGTGGGCGCAGTGAACCGC
ATCTATAAGCTGTCGGGGAACCTGACACTGCTGCGGGCCCACGTCACGGGCCCTGTGGAGGACAACGAGA
AGTGCTACCCGCCGCCCAGCGTGCAGTCCTGCCCCCACGGCCTGGGCAGTACTGACAACGTCAACAAGCT
GCTGCTGCTGGACTATGCCGCTAACCGCCTGCTGGCCTGTGGCAGCGCCTCCCAGGGCATCTGCCAGTTC
CTGCGTCTGGACGATCTCTTCAAACTGGGTGAGCCACACCACCGTAAGGAGCACTACCTGTCCAGCGTGC
AGGAGGCAGGCAGCATGGCGGGCGTGCTCATTGCCGGGCCACCGGGCCAGGGCCAGGCCAAGCTCTTCGT
GGGCACACCCATCGATGGCAAGTCCGAGTACTTCCCCACACTGTCCAGCCGTCGGCTCATGGCCAACGAG
GAGGATGCCGACATGTTCGGCTTCGTGTACCAGGATGAGTTTGTGTCATCACAGCTCAAGATCCCTTCGG
ACACGCTGTCCAAGTTCCCGGCCTTTGACATCTACTATGTGTACAGCTTCCGCAGCGAGCAGTTTGTCTA
CTACCTCACGCTGCAGCTAGACACACAGCTGACCTCGCCTGATGCCGCCGGCGAGCACTTCTTCACGTCC
AAGATCGTGCGGCTCTGTGTGGACGACCCCAAATTCTACTCGTACGTTGAGTTCCCCATTGGCTGCGAGC
AGGCGGGTGTGGAGTACCGCCTGGTGCAGGATGCCTACCTGAGCCGGCCCGGCCGTGCCCTGGCCCACCA
GCTGGGCCTGGCTGAGGACGAGGACGTGCTGTTCACTGTGTTCGCCCAGGGCCAGAAGAACCGCGTGAAG
CCACCAAAGGAGTCAGCACTGTGCCTGTTCACGCTCAGGGCCATCAAGGAGAAGATTAAGGAGCGCATCC
AGTCCTGCTACCGTGGTGAGGGCAAGCTCTCCCTGCCGTGGCTGCTCAACAAGGAGCTGGGCTGCATCAA
CTCGCCCCTGCAGATCGATGACGACTTCTGCGGGCAGGACTTCAACCAGCCCCTGGGGGGCACAGTCACC
ATTGAGGGGACGCCCCTGTTCGTGGACAAGGATGATGGCCTGACCGCCGTGGCTGCCTATGACTATCGGG
GCCGCACTGTGGTATTCGCCGGCACGCGAAGTGGCCGCATCCGCAAGATCCTGGTGGACCTCTCAAACCC
CGGTGGCCGGCCTGCCCTGGCCTACGAGAGCGTCGTGGCCCAGGAGGGCAGCCCCATCCTGCGAGACCTC
GTCCTCAGCCCCAACCACCAGTACCTCTACGCCATGACCGAGAAGCAGGTGACGCGGGTGCCTGTGGAGA
GCTGTGTGCAGTACACGTCCTGTGAGCTGTGTCTGGGGTCACGGGACCCCCACTGTGGCTGGTGTGTCCT
GCACAGCATCTGCTCGCGGCGGGACGCCTGTGAGCGAGCAGACGAGCCCCAGCGCTTTGCTGCGGACCTG
CTGCAGTGTGTGCAGCTGACTGTGCAGCCCCGCAATGTGTCTGTCACCATGTCCCAGGTCCCACTTGTGC
TGCAGGCCTGGAACGTGCCTGACCTCTCAGCTGGCGTCAACTGCTCCTTCGAGGACTTCACGGAATCTGA
GAGCGTCCTGGAGGATGGCCGGATCCACTGCCGCTCACCCTCCGCCCGGGAGGTGGCGCCCATCACGCGG
GGCCAGGGAGACCAGCGGGTGGTGAAACTCTACCTAAAGTCCAAGGAGACAGGGAAGAAGTTTGCGTCTG
TGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTCCTGCCTGTCCTGTGTCAACGGCTCCTTTCCCTG
CCACTGGTGCAAATACCGCCACGTGTGCACACACAACGTGGCTGACTGCGCCTTCCTGGAGGGCCGTGTC
AACGTGTCTGAGGACTGCCCACAGATCCTGCCCTCCACGCAGATCTACGTGCCAGTGGGAGTGGTAAAAC
CCATCACCCTGGCCGCACGGAACCTGCCACAGCCACAGTCAGGCCAGCGTGGATATGAGTGCCTCTTCCA
CATCCCGGGCAGCCCGGCCCGTGTCACCGCCCTGCGCTTCAACAGCTCCAGCCTGCAGTGCCAGAATTCC
TCGTACTCCTACGAGGGGAACGATGTCAGCGACCTGCCAGTGAACCTGTCAGTCGTGTGGAACGGCAACT
TTGTCATTGACAACCCACAGAACATCCAGGCGCACCTCTACAAGTGCCCGGCCCTGCGCGAGAGCTGCGG
CCTCTGCCTCAAGGCCGACCCGCGCTTCGAGTGCGGATGGTGCGTGGCCGAGCGCCGCTGCTCCCTGCGA
CACCACTGCGCTGCCGACACACCTGCATCGTGGATGCACGCGCGTCACGGCAGCAGTCGCTGCACCGACC
CCAAGATCCTCAAGCTGTCCCCCGAGACGGGCCCGAGGCAGGGCGGCACGCGGCTCACTATCACAGGCGA
GAACCTGGGCCTGCGATTCGAAGACGTGCGTCTGGGCGTGCGCGTGGGCAAGGTGCTGTGCAGCCCTGTG
GAGAGCGAGTACATCAGTGCGGAGCAGATCGTCTGTGAGATCGGGGACGCCAGCTCCGTGCGTGCCCATG
ACGCCCTGGTGGAGGTGTGTGTGCGGGACTGCTCACCACACTACCGCGCCCTGTCACCCAAGCGCTTCAC
CTTCGTGACACCAACCTTCTACCGTGTGAGCCCCTCCCGTGGGCCTCTGTCAGGGGGCACCTGGATTGGC
ATCGAGGGAAGCCACCTGAACGCAGGCAGTGATGTGGCTGTGTCGGTCGGTGGCCGGCCCTGCTCCTTCT
CCTGGAGGAACTCCCGTGAGATCCGGTGCCTGACACCCCCCGGGCAGAGCCCTGGCAGCGCTCCCATCAT
CATCAACATCAACCGCGCCCAGCTCACCAACCCTGAGGTGAAGTACAACTACACCGAGGACCCCACCATC
CTGAGGATCGACCCCGAGTGGAGCATCAACAGCGGTGGGACCCTCCTGACGGTCACAGGCACCAACCTGG
CCACTGTCCGTGAACCCCGAATCCGGGCCAAGTATGGAGGCATTGAGAGGGAGAACGGCTGCCTGGTGTA
CAATGACACCACCATGGTATGCCGCGCCCCGTCTGTGGCCAACCCTGTGCGCAGCCCACCAGAGCTGGGG
GAGCGGCCGGATGAGCTGGGCTTCGTCATGGACAACGTGCGCTCCCTGCTTGTGCTCAACTCCACCTCCT
TCCTCTACTACCCTGACCCCGTACTGGAGCCACTCAGCCCCACTGGCCTGCTGGAGCTGAAGCCCAGCTC
CCCACTCATCCTCAAGGGCCGGAACCTCTTGCCACCTGCACCCGGCAACTCCCGACTCAACTACACGGTG
CTCATCGGCTCCACACCCTGTACCCTCACCGTGTCGGAGACGCAACTGCTGTGCGAGGCGCCCAACCTCA
CTGGGCAGCACAAGGTCACGGTGCGGGCAGGTGGCTTCGAGTTCTCGCCAGGGACACTGCAGGTGTACTC
GGACAGCCTGCTGACGCTGCCTGCCATTGTGGGCATTGGCGGAGGCGGGGGTCTCCTGCTGCTGGTCATC
GTGGCTGTGCTCATCGCCTACAAGCGCAAGTCACGAGATGCTGACCGCACACTCAAGCGGCTGCAGCTCC
AGATGGACAACCTGGAGTCCCGCGTGGCCCTCGAATGCAAGGAAGCCTTTGCAGAGCTGCAGACAGACAT
CCACGAGCTGACCAATGACCTGGACGGTGCCGGCATCCCCTTCCTTGACTACCGGACATATGCCATGCGG
GTGCTCTTTCCTGGGATCGAGGACCACCCTGTGCTCAAGGAGATGGAGGTGCAGGCCAATGTGGAGAAGT
CGCTGACACTGTTCGGGCAGCTGCTGACCAAGAAGCACTTCCTGCTGACCTTCATCCGCACGCTGGAGGC
ACAGCGCAGCTTCTCCATGCGCGACCGCGGGAATGTGGCCTCGCTCATCATGACGGCCCTGCAGGGCGAG
ATGGAATACGCCACAGGCGTGCTCAAGCAGCTGCTTTCCGACCTCATCGAGAAGAACCTGGAGAGCAAGA
ACCACCCCAAGCTGCTACTGCGCCGGACTGAGTCGGTGGCAGAGAAGATGCTAACTAACTGGTTCACCTT
CCTCTTGTATAAGTTCCTCAAGGAGTGCGCTGGGGAGCCGCTGTTCATGCTGTACTGCGCCATCAAGCAG
CAGATGGAGAAGGGCCCCATTGACGCCATCACGGGTGAGGCACGCTACTCCCTGAGTGAGGACAAGCTCA
TCCGGCAGCAGATTGACTACAAGACACTGACCCTGAACTGTGTGAACCCTGAGAATGAGAATGCACCTGA
GGTGCCGGTGAAGGGGCTGGACTGTGACACGGTCACCCAGGCCAAGGAGAAGCTGCTGGACGCTGCCTAC
AAGGGCGTGCCCTACTCCCAGCGGCCCAAGGCCGCGGACATGGACCTGGAGTGGCGCCAGGGCCGCATGG
CGCGCATCATCCTGCAGGACGAGGACGTCACCACCAAGATTGACAACGATTGGAAGAGGCTGAACACACT
GGCTCACTACCAGGTGACAGACGGGTCCTCGGTGGCACTGGTGCCCAAGCAGACGTCCGCCTACAACATC
TCCAACTCCTCCACCTTCACCAAGTCCCTCAGCAGATACGAGAGCATGCTGCGCACGGCCAGCAGCCCCG
ACAGCCTGCGCTCGCGCACGCCCATGATCACGCCCGACCTGGAGAGCGGCACCAAGCTGTGGCACCTGGT
GAAGAACCACGACCACCTGGACCAGCGTGAGGGTGACCGCGGCAGCAAGATGGTCTCGGAGATCTACTTG
ACACGGCTACTGGCCACCAAGGGCACACTGCAGAAGTTTGTGGACGACCTGTTTGAGACCATCTTCAGCA
CGGCACACCGGGGCTCAGCCCTGCCGCTGGCCATCAAGTACATGTTCGACTTCCTGGATGAGCAGGCCGA
CAAGCACCAGATCCACGATGCTGACGTGCGCCACACCTGGAAGAGCAACTGCCTGCCCCTGCGCTTCTGG
GTGAACGTGATCAAGAACCCACAGTTTGTGTTCGACATTCACAAGAACAGCATCACGGACGCCTGCTTGT
CGGTGGTGGCCCAGACCTTCATGGACTCCTGCTCCACCTCTGAGCACAAGCTGGGCAAGGACTCACCCTC
CAACAAGCTGCTCTACGCCAAGGACATCCCCAACTACAAGAGCTGGGTGGAGAGGTACTATGCAGACATC
GCCAAGATGCCAGCCATCAGCGACCAGGACATGAGTGCGTATCTGGCTGAGCAGTCCCGCCTGCACCTGA
GCCAGTTCAACAGCATGAGCGCCTTGCACGAGATCTACTCCTACATCACCAAGTACAAGGATGAGATCCT
GGCAGCCCTGGAGAAGGATGAGCAGGCGCGGCGGCAGCGGCTGCGGAGCAAGCTGGAGCAGGTGGTGGAC
ACGATGGCCCTGAGCAGCTGA

Translation (1896 aa):
MPLPPRSLQVLLLLLLLLLLLPGMWAEAGLPRAGGGSQPPFRTFSASDWGLTHLVVHEQTGEVYVGAVNR
IYKLSGNLTLLRAHVTGPVEDNEKCYPPPSVQSCPHGLGSTDNVNKLLLLDYAANRLLACGSASQGICQF
LRLDDLFKLGEPHHRKEHYLSSVQEAGSMAGVLIAGPPGQGQAKLFVGTPIDGKSEYFPTLSSRRLMANE
EDADMFGFVYQDEFVSSQLKIPSDTLSKFPAFDIYYVYSFRSEQFVYYLTLQLDTQLTSPDAAGEHFFTS
KIVRLCVDDPKFYSYVEFPIGCEQAGVEYRLVQDAYLSRPGRALAHQLGLAEDEDVLFTVFAQGQKNRVK
PPKESALCLFTLRAIKEKIKERIQSCYRGEGKLSLPWLLNKELGCINSPLQIDDDFCGQDFNQPLGGTVT
IEGTPLFVDKDDGLTAVAAYDYRGRTVVFAGTRSGRIRKILVDLSNPGGRPALAYESVVAQEGSPILRDL
VLSPNHQYLYAMTEKQVTRVPVESCVQYTSCELCLGSRDPHCGWCVLHSICSRRDACERADEPQRFAADL
LQCVQLTVQPRNVSVTMSQVPLVLQAWNVPDLSAGVNCSFEDFTESESVLEDGRIHCRSPSAREVAPITR
GQGDQRVVKLYLKSKETGKKFASVDFVFYNCSVHQSCLSCVNGSFPCHWCKYRHVCTHNVADCAFLEGRV
NVSEDCPQILPSTQIYVPVGVVKPITLAARNLPQPQSGQRGYECLFHIPGSPARVTALRFNSSSLQCQNS
SYSYEGNDVSDLPVNLSVVWNGNFVIDNPQNIQAHLYKCPALRESCGLCLKADPRFECGWCVAERRCSLR
HHCAADTPASWMHARHGSSRCTDPKILKLSPETGPRQGGTRLTITGENLGLRFEDVRLGVRVGKVLCSPV
ESEYISAEQIVCEIGDASSVRAHDALVEVCVRDCSPHYRALSPKRFTFVTPTFYRVSPSRGPLSGGTWIG
IEGSHLNAGSDVAVSVGGRPCSFSWRNSREIRCLTPPGQSPGSAPIIININRAQLTNPEVKYNYTEDPTI
LRIDPEWSINSGGTLLTVTGTNLATVREPRIRAKYGGIERENGCLVYNDTTMVCRAPSVANPVRSPPELG
ERPDELGFVMDNVRSLLVLNSTSFLYYPDPVLEPLSPTGLLELKPSSPLILKGRNLLPPAPGNSRLNYTV
LIGSTPCTLTVSETQLLCEAPNLTGQHKVTVRAGGFEFSPGTLQVYSDSLLTLPAIVGIGGGGGLLLLVI
VAVLIAYKRKSRDADRTLKRLQLQMDNLESRVALECKEAFAELQTDIHELTNDLDGAGIPFLDYRTYAMR
VLFPGIEDHPVLKEMEVQANVEKSLTLFGQLLTKKHFLLTFIRTLEAQRSFSMRDRGNVASLIMTALQGE
MEYATGVLKQLLSDLIEKNLESKNHPKLLLRRTESVAEKMLTNWFTFLLYKFLKECAGEPLFMLYCAIKQ
QMEKGPIDAITGEARYSLSEDKLIRQQIDYKTLTLNCVNPENENAPEVPVKGLDCDTVTQAKEKLLDAAY
KGVPYSQRPKAADMDLEWRQGRMARIILQDEDVTTKIDNDWKRLNTLAHYQVTDGSSVALVPKQTSAYNI
SNSSTFTKSLSRYESMLRTASSPDSLRSRTPMITPDLESGTKLWHLVKNHDHLDQREGDRGSKMVSEIYL
TRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDEQADKHQIHDADVRHTWKSNCLPLRFW
VNVIKNPQFVFDIHKNSITDACLSVVAQTFMDSCSTSEHKLGKDSPSNKLLYAKDIPNYKSWVERYYADI
AKMPAISDQDMSAYLAEQSRLHLSQFNSMSALHEIYSYITKYKDEILAALEKDEQARRQRLRSKLEQVVD
TMALSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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