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Report for CCDS33838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33838.1 Public Homo sapiens 3 MIX23 24 110 108 CCDS HistoryNCBI Gene:131076Re-query CCDS DB by CCDS ID:33838.1Re-query CCDS DB by GeneID:131076See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33838.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291458.9 ENSP00000291458.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291458.9Link to Ensembl Protein Viewer:ENSP00000291458.5Re-query CCDS DB by Nucleotide ID:ENST00000291458Re-query CCDS DB by Protein ID:ENSP00000291458
Original member Current member NCBI NM_001017928.4 NP_001017928.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001017928.4Link to Protein Sequence:NP_001017928.1Re-query CCDS DB by Nucleotide ID:NM_001017928Re-query CCDS DB by Protein ID:NP_001017928Link to BLAST:NP_001017928.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017928.1 144 Q4VC31 144 100% 0 0

Chromosomal Locations for CCDS 33838.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 122359869 122359919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122362968 122363027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122368176 122368322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122371675 122371800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122383174 122383224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGGCGGCGCCCAGTGGCGGTGTGAACTGTGAGGAGTTCGCCGAGTTCCAGGAATTACTCAAGGTGATGA
GG
ACAATTGATGACAGAATAGTACATGAATTAAACACTACGGTTCCAACAGCTTCCTTTGCAGGGAAAAT
T
GATGCCAGCCAAACCTGTAAACAACTTTATGAGTCTTTGATGGCAGCTCATGCCAGTAGAGACAGAGTC
ATA
AAAAACTGTATAGCCCAGACTTCAGCAGTAGTAAAAAACCTCCGAGAAGAGAGAGAAAAGAATTTGG
AC
GATTTAACGTTATTAAAACAACTTAGAAAAGAGCAGACAAAGTTGAAATGGATGCAGTCAGAACTGAA
T
GTTGAAGAAGTGGTAAATGACAGGAGCTGGAAGGTGTTTAATGAACGCTGCCGAATTCACTTCAAGCCT
CCA
AAGAATGAATAA


Translation (144 aa):
MAAPSGGVNCEEFAEFQELLKVMRTIDDRIVHELNTTVPTASFAGKIDASQTCKQLYESLMAAHASRDRV
I
KNCIAQTSAVVKNLREEREKNLDDLTLLKQLRKEQTK
LKWMQSELNVEEVVNDRSWKVFNERCRIHFKP
P
KNE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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