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Report for CCDS33790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33790.1 Public Homo sapiens 3 CNTN3 24 110 108 CCDS HistoryNCBI Gene:5067Re-query CCDS DB by CCDS ID:33790.1Re-query CCDS DB by GeneID:5067See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33790.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263665.7 ENSP00000263665.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263665.7Link to Ensembl Protein Viewer:ENSP00000263665.6Re-query CCDS DB by Nucleotide ID:ENST00000263665Re-query CCDS DB by Protein ID:ENSP00000263665
Original member Current member NCBI NM_001393376.1 NP_001380305.1 Accepted alive Link to Nucleotide Sequence:NM_001393376.1Link to Protein Sequence:NP_001380305.1Re-query CCDS DB by Nucleotide ID:NM_001393376Re-query CCDS DB by Protein ID:NP_001380305Link to BLAST:NP_001380305.1
Original member Current member NCBI NM_020872.3 NP_065923.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020872.3Link to Protein Sequence:NP_065923.1Re-query CCDS DB by Nucleotide ID:NM_020872Re-query CCDS DB by Protein ID:NP_065923Link to BLAST:NP_065923.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001380305.1 1028 Q9P232 1028 100% 0 0
NP_065923.1 1028 Q9P232 1028 100% 0 0

Chromosomal Locations for CCDS 33790.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 74264401 74264501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74266481 74266649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74267266 74267378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74285305 74285491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74295121 74295236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74297957 74298191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74299868 74299938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74301398 74301547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74301647 74301805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74302690 74302807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74334735 74334910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74336531 74336658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74361890 74362040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74364467 74364596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74365566 74365702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74369189 74369373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74369889 74369991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74371196 74371399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74424845 74424940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74486456 74486631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74499659 74499785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 74521058 74521112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3087 nt):
ATGATGTTTCCATGGAAACAGTTGATCCTGCTTTCATTCATTGGCTGCTTAGGAGGTGAGCTTCTCTTAC
AAGGCCCTGTATTTATCAAAGAACCCAGCAACAGCATTTTCCCTGTTGGTTCAGAAGATAAAAAAATAAC
TTTGCATTGTGAAGCAAGAGGCAATCCATCACCTCATTACAGATGGCAGCTGAATGGAAGTGATATTGAT
ATGAGTATGGAACATCGTTATAAGTTGAATGGAGGAAATCTTGTGGTTATTAATCCCAACAGAAATTGGG
ATACAGGAACTTACCAATGTTTTGCAACAAATTCACTTGGAACAATTGTCAGCAGAGAAGCCAAACTTCA
GTTTGCCTATCTTGAAAATTTTAAAACCAAAATGAGGAGTACAGTGTCTGTGCGTGAAGGCCAGGGAGTT
GTGCTGCTCTGCGGCCCCCCACCACACTCTGGAGAACTGTCATATGCTTGGATCTTCAATGAATACCCAT
CGTTTGTTGAAGAAGATAGTCGGAGATTTGTCTCCCAGGAGACAGGGCACCTCTACATATCTAAGGTGGA
GCCGTCTGATGTGGGAAATTACACATGTGTGGTGACAAGTATGGTGACAAATGCCCGAGTGCTGGGCTCT
CCAACTCCTTTGGTGCTACGTTCTGATGGTGTGATGGGTGAATATGAACCTAAAATAGAAGTTCAGTTTC
CAGAAACTCTTCCAGCAGCTAAAGGTTCGACTGTGAAATTGGAATGTTTTGCCCTTGGAAATCCCATACC
TCAGATTAATTGGAGAAGAAGTGATGGGCTGCCATTTTCCAGCAAAATTAAATTAAGGAAGTTCAGTGGT
GTGCTTGAAATCCCCAACTTCCAACAGGAAGATGCAGGTTCCTATGAATGCATTGCTGAGAATTCACGAG
GAAAAAATGTTGCCAGAGGGCGTCTCACTTACTATGCAAAGCCCCATTGGGTTCAACTCATAAAGGATGT
GGAAATAGCCGTGGAGGACAGTCTTTATTGGGAATGCAGGGCAAGCGGCAAGCCCAAGCCTTCCTACCGA
TGGCTGAAAAATGGAGCAGCCCTGGTGCTAGAGGAGAGAACACAGATAGAAAATGGTGCCCTTACAATAT
CAAACCTAAGTGTGACTGATTCTGGCATGTTCCAATGCATAGCAGAAAACAAACATGGCCTTGTTTATTC
CAGTGCTGAGCTCAAAGTTGTTGCTTCTGCTCCAGATTTTTCAAAGAATCCAATGAAGAAGTTGGTTCAG
GTGCAGGTGGGCAGCCTGGTCAGCTTGGATTGTAAACCCAGAGCCTCCCCAAGGGCACTCTCTTCCTGGA
AGAAGGGGGATGTGAGCGTGCAGGAGCATGAAAGAATTTCTTTGTTAAACGATGGAGGACTCAAAATAGC
CAATGTGACTAAAGCTGATGCTGGAACTTACACCTGCATGGCAGAAAACCAGTTTGGGAAAGCAAATGGC
ACAACACATTTGGTTGTTACGGAACCAACAAGAATAACTTTGGCACCATCTAACATGGATGTTTCTGTTG
GTGAAAGCGTCATATTGCCCTGCCAGGTACAACATGACCCGCTGTTAGACATCATCTTTACCTGGTATTT
CAATGGGGCCCTTGCAGATTTTAAGAAAGATGGATCTCACTTTGAGAAAGTTGGTGGGAGTTCATCTGGT
GATTTAATGATCAGAAACATTCAGCTGAAACACAGTGGGAAATATGTTTGTATGGTGCAAACGGGGGTGG
ACAGTGTTTCATCTGCTGCTGACCTCATAGTAAGAGGTTCACCTGGACCACCAGAAAATGTGAAGGTAGA
TGAAATTACAGACACAACAGCCCAACTCTCTTGGAAAGAAGGTAAAGACAACCATAGCCCAGTTATATCC
TATTCTATCCAGGCTCGGACACCTTTCTCCGTGGGTTGGCAAACCGTCACAACAGTGCCTGAGGTCATCG
ATGGGAAGACGCACACAGCCACTGTAGTTGAGTTAAACCCATGGGTGGAATATGAATTTCGGGTTGTAGC
CAGTAACAAAATTGGAGGTGGAGAACCAAGTTTACCCTCAGAAAAAGTAAGAACTGAAGAGGCAGTTCCA
GAAGTGCCTCCTTCTGAAGTCAATGGAGGAGGCGGAAGCCGGTCTGAACTTGTGATAACCTGGGATCCAG
TCCCTGAAGAACTACAGAATGGTGAAGGTTTTGGGTATGTTGTTGCTTTCCGCCCTCTTGGGGTTACCAC
CTGGATCCAGACAGTGGTGACATCCCCTGACACCCCAAGATATGTCTTTAGGAATGAAAGCATCGTGCCA
TATTCACCATATGAAGTTAAAGTGGGTGTTTATAATAACAAAGGTGAAGGACCATTTAGCCCAGTGACAA
CAGTGTTCTCTGCAGAAGAAGAGCCTACAGTGGCCCCATCTCAAGTCTCTGCAAATAGCCTATCTTCCTC
AGAAATTGAGGTTTCATGGAACACCATTCCTTGGAAGTTGAGCAATGGACATTTACTGGGCTATGAGGTG
CGGTACTGGAATGGGGGTGGAAAGGAGGAATCATCCAGTAAGATGAAAGTGGCAGGAAATGAGACATCAG
CCAGACTACGGGGCCTGAAGAGCAACCTGGCCTATTACACGGCTGTCCGGGCTTACAACAGTGCCGGCGC
TGGGCCTTTTAGCGCCACAGTTAATGTAACCACCAAGAAAACGCCTCCCAGTCAGCCACCAGGAAATGTT
GTTTGGAATGCCACAGACACTAAAGTGTTACTTAATTGGGAGCAAGTTAAAGCCATGGAGAATGAGTCAG
AAGTAACAGGATATAAAGTTTTCTATAGGACTAGCAGTCAAAATAACGTACAAGTACTGAACACAAATAA
AACTTCAGCTGAACTTGTGCTGCCCATTAAAGAGGACTACATTATTGAAGTCAAGGCCACAACAGATGGA
GGGGATGGGACCAGTAGTGAACAGATCAGGATTCCACGAATAACCAGTATGGATGCAAGAGGATCCACTT
CAGCCATCTCGAATGTCCACCCTATGTCAAGTTATATGCCTATAGTACTGTTCTTAATTGTATATGTCCT
GTGGTGA

Translation (1028 aa):
MMFPWKQLILLSFIGCLGGELLLQGPVFIKEPSNSIFPVGSEDKKITLHCEARGNPSPHYRWQLNGSDID
MSMEHRYKLNGGNLVVINPNRNWDTGTYQCFATNSLGTIVSREAKLQFAYLENFKTKMRSTVSVREGQGV
VLLCGPPPHSGELSYAWIFNEYPSFVEEDSRRFVSQETGHLYISKVEPSDVGNYTCVVTSMVTNARVLGS
PTPLVLRSDGVMGEYEPKIEVQFPETLPAAKGSTVKLECFALGNPIPQINWRRSDGLPFSSKIKLRKFSG
VLEIPNFQQEDAGSYECIAENSRGKNVARGRLTYYAKPHWVQLIKDVEIAVEDSLYWECRASGKPKPSYR
WLKNGAALVLEERTQIENGALTISNLSVTDSGMFQCIAENKHGLVYSSAELKVVASAPDFSKNPMKKLVQ
VQVGSLVSLDCKPRASPRALSSWKKGDVSVQEHERISLLNDGGLKIANVTKADAGTYTCMAENQFGKANG
TTHLVVTEPTRITLAPSNMDVSVGESVILPCQVQHDPLLDIIFTWYFNGALADFKKDGSHFEKVGGSSSG
DLMIRNIQLKHSGKYVCMVQTGVDSVSSAADLIVRGSPGPPENVKVDEITDTTAQLSWKEGKDNHSPVIS
YSIQARTPFSVGWQTVTTVPEVIDGKTHTATVVELNPWVEYEFRVVASNKIGGGEPSLPSEKVRTEEAVP
EVPPSEVNGGGGSRSELVITWDPVPEELQNGEGFGYVVAFRPLGVTTWIQTVVTSPDTPRYVFRNESIVP
YSPYEVKVGVYNNKGEGPFSPVTTVFSAEEEPTVAPSQVSANSLSSSEIEVSWNTIPWKLSNGHLLGYEV
RYWNGGGKEESSSKMKVAGNETSARLRGLKSNLAYYTAVRAYNSAGAGPFSATVNVTTKKTPPSQPPGNV
VWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDG
GDGTSSEQIRIPRITSMDARGSTSAISNVHPMSSYMPIVLFLIVYVLW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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