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Report for CCDS33770.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33770.2 Public Homo sapiens 3 CCDC66 24 110 108 CCDS HistoryNCBI Gene:285331Re-query CCDS DB by CCDS ID:33770.2Re-query CCDS DB by GeneID:285331See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 33770.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data. This CCDS ID represents a 5' end variant that is supported by human BC047509.1 and CF994722.1, and by orangutan CR857607.1. The encoded isoform has a shorter N-terminus compared to the isoform encoded by NM_001141947.1.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33770.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326595.11 ENSP00000326050.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000326595.11Link to Ensembl Protein Viewer:ENSP00000326050.7Re-query CCDS DB by Nucleotide ID:ENST00000326595Re-query CCDS DB by Protein ID:ENSP00000326050
Original member Current member NCBI NM_001012506.5 NP_001012524.4 Accepted alive Link to Nucleotide Sequence:NM_001012506.5Link to Protein Sequence:NP_001012524.4Re-query CCDS DB by Nucleotide ID:NM_001012506Re-query CCDS DB by Protein ID:NP_001012524Link to BLAST:NP_001012524.4
Original member Current member NCBI NM_001353152.1 NP_001340081.1 Accepted alive Link to Nucleotide Sequence:NM_001353152.1Link to Protein Sequence:NP_001340081.1Re-query CCDS DB by Nucleotide ID:NM_001353152Re-query CCDS DB by Protein ID:NP_001340081Link to BLAST:NP_001340081.1
Original member Current member NCBI NM_001353153.1 NP_001340082.1 Accepted alive Link to Nucleotide Sequence:NM_001353153.1Link to Protein Sequence:NP_001340082.1Re-query CCDS DB by Nucleotide ID:NM_001353153Re-query CCDS DB by Protein ID:NP_001340082Link to BLAST:NP_001340082.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012524.4 914 A2RUB6-3 914 100% 0 0
NP_001340081.1 914 A2RUB6-3 914 100% 0 0
NP_001340082.1 914 A2RUB6-3 914 100% 0 0

Chromosomal Locations for CCDS 33770.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 56563684 56564125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56566594 56566759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56566950 56567053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56571181 56571302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56592970 56593101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56593491 56593741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56593944 56594028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56613589 56613750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56615128 56615272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56615922 56616053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56617112 56617605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56618172 56618212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56619271 56619527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56619777 56619901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56621532 56621618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2745 nt):
ATGGGAAATAAGGCCAAGATTGCAAAATGTCCTTTAAGAACAAAAACTGGGCACATTCTAAAATCAACAC
AAGATACTTGTATTGGGAGTGAAAAACTTTTGCAAAAGAAGCCAGTTGGTTCAGAAACATCACAGGCAAA
AGGTGAAAAAAATGGAATGACTTTTTCATCCACTAAGGATTTATGTAAACAATGTATAGATAAAGACTGT
CTTCATATCCAGAAAGAGATTTCACCTGCAACCCCTAATATGCAGAAGACTAGAAACACCGTAAATACAT
CTCTAGTAGGTAAACAGAAGCCTCACAAAAAACACATCACAGCTGAAAACATGAAGAGCAGTTTGGTGTG
TCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCTGACT
GAGAATGGAAAGGAGGCAAAAAGTCAATATAGTCTATATTTAAACAGTATTTCTAATCAGCCAAAGGATG
AGAACATTATGGGATTATTCAAAAAAACTGAAATGGTTTCATCTGTCCCAGCTGAAAATAAATCTGTCTT
AAATGAACATCAGGAGACATCTAAACAGTGTGAGCAAAAAATTGCCATAGAGAATGAATGGAAACCAGCT
GATATATTCAGTACTCTGGGGGAAAGGGAATGTGATAGAAGTTCGTTGGAAGCAAAAAAAGCCCAGTGGA
GGAAAGAGCTAGATGAACAGGTTGCTTTAAAGAAGAAAGAAAAAGAAGTTTCTGAAAAATGGAATGATCC
TTGGAAAAAATCTGAAAGTGATAAAATAATATGGGAAAAACATCAAATTCTTGACCAATCTAGGGAAACA
GTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTTGAATA
AGCAAATAGAAGATGACCGTCAAAGAAAAATAGAGGAAAAAATTATATATTCAAAGGGTGAGGAACATGA
CAGATGGGCAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTCAATCTCAGCTGTTCTCTCAGTCA
ACACACAAACAACCTGAGTACTTCTGTGTCTCTCCTGACACTCAGGAGCTGGCTGATGTCAGCAGTGTTT
GTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATAGCAAAACCTATTAAGGATGT
GGTTATGGCAAACAGTAAGAAAACAAACTTTCTCCGTTCTATGACTGCTCTCTTGGACCCAGCTCAGATT
GAGGAACGAGACAGACGACGACAAAAACAATTAGAGCATCAGAAAGCCATCACTGCCCAGGTAGAAGAGA
AGCGCAGGAAGAAACAACTGGAGGAAGAGCAAAGAAAGAAGGAAGAACAAGAAGAGGAGCTTCGCTTAGC
ACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGACATACTTAAGCAAAAACAAAAGGAAGAAATC
ATGACTCTCAAGACAAATGAGCTATTCCAGACAATGCAGCGAGCACAGGAACTGGCACAGAGACTAAAAC
AAGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACATGACACTTCTAGACTGATTAAAAATCTTGGTGT
TGATACAATACAAATGGAATATAATGCATCTAACATTTCAAATTCAAGACATGATTCTGATGAAATCAGT
GGTAAAATGAATACATATATGAATTCTACGACTTCTAAGAAGGATACTGGTGTGCAAACAGATGACTTAA
ATATAGGAATATTCACCAATGCAGAATCACATTGTGGATCATTAATGGAGAGGGACATCACAAATTGTTC
ATCTCCTGAGATTTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAACTCAG
GATAAAGGAGCCAGCTTAGAAAAAGAAAACAATCGGTGTAATGACCAGTGTAATCAGTTCACAAGAATAG
AGAAACAAACAAAACACATGAAGAAATATCCTAAAAGGCCTGATTGGAATATAAATAAGCCACCTAAAAG
GTATATTCCAGCATCAGAAAAGTACCCTAAACAGCTTCAAAAGCAGAGAGAAGAAAAAAAAGTAAGGAGG
CAGATGGAATTGCTTCATTTGGTAGAAAAAAATAATCCTGGGCACCTCTCTCAAAACAGAGGCATTTCAC
CAGAAATTTTTCATTCATCTCATCAAGAAACGGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGAAGA
AGAGCCTCTGAATATTCATTCATTCAGCAAGGAAAGGTCTCCATCATCACCAGTTCCAGTAGTGAAAAAC
AGAACCCAACAAACTCAAAATACATTACATTTACCACTAAAAAACAGTAGCTATGAGAGAGAGAATTTGA
TCTCAGGAAGTAATCAAACAGAATTATCATCTGGGATTTCTGAATCATCCCATTTTATTCCGTATGTTCG
AACAAATGAGATCTATTACCTTGATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTAC
CAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATTCTGACTGTGTCAGGGATCCACTTCTTA
ATCCTAACATGGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTCAGAACTGAGACAGGG
CCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGAAAATCAAGAAGAGAGTTTT
GGTTCTTCATTTTAA

Translation (914 aa):
MGNKAKIAKCPLRTKTGHILKSTQDTCIGSEKLLQKKPVGSETSQAKGEKNGMTFSSTKDLCKQCIDKDC
LHIQKEISPATPNMQKTRNTVNTSLVGKQKPHKKHITAENMKSSLVCLTQDQLQQILMTVNQGNRSLSLT
ENGKEAKSQYSLYLNSISNQPKDENIMGLFKKTEMVSSVPAENKSVLNEHQETSKQCEQKIAIENEWKPA
DIFSTLGERECDRSSLEAKKAQWRKELDEQVALKKKEKEVSEKWNDPWKKSESDKIIWEKHQILDQSRET
VLLEHPFSAVKQELQRKWIEELNKQIEDDRQRKIEEKIIYSKGEEHDRWAMHFDSLKSYPGSQSQLFSQS
THKQPEYFCVSPDTQELADVSSVCTPTTGSQVEPSEEEHIAKPIKDVVMANSKKTNFLRSMTALLDPAQI
EERDRRRQKQLEHQKAITAQVEEKRRKKQLEEEQRKKEEQEEELRLAQEREEMQKQYEEDILKQKQKEEI
MTLKTNELFQTMQRAQELAQRLKQEQRIRELAQKGHDTSRLIKNLGVDTIQMEYNASNISNSRHDSDEIS
GKMNTYMNSTTSKKDTGVQTDDLNIGIFTNAESHCGSLMERDITNCSSPEISAELIGQFSTKKNKQELTQ
DKGASLEKENNRCNDQCNQFTRIEKQTKHMKKYPKRPDWNINKPPKRYIPASEKYPKQLQKQREEKKVRR
QMELLHLVEKNNPGHLSQNRGISPEIFHSSHQETESKLRWHLVKKEEEPLNIHSFSKERSPSSPVPVVKN
RTQQTQNTLHLPLKNSSYERENLISGSNQTELSSGISESSHFIPYVRTNEIYYLDPDAPLSGPSTQDPQY
QNSQDCGQKRQLFDSDCVRDPLLNPNMVKNRDRQQAILKGLSELRQGLLQKQKELESSLLPLAENQEESF
GSSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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