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Report for CCDS3377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3377.1 Public Homo sapiens 4 STX18 24 110 108 CCDS HistoryNCBI Gene:53407Re-query CCDS DB by CCDS ID:3377.1Re-query CCDS DB by GeneID:53407See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3377.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306200.7 ENSP00000305810.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306200.7Link to Ensembl Protein Viewer:ENSP00000305810.2Re-query CCDS DB by Nucleotide ID:ENST00000306200Re-query CCDS DB by Protein ID:ENSP00000305810
Original member Current member NCBI NM_016930.4 NP_058626.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016930.4Link to Protein Sequence:NP_058626.1Re-query CCDS DB by Nucleotide ID:NM_016930Re-query CCDS DB by Protein ID:NP_058626Link to BLAST:NP_058626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058626.1 335 Q9P2W9 335 100% 0 0

Chromosomal Locations for CCDS 3377.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 4420034 4420129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4420864 4420944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4423518 4423587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4425164 4425222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4434770 4434858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4438394 4438509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4457191 4457257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4457423 4457500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4459372 4459487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4471639 4471706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4541797 4541964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGCGGTGGACATCACGCTGCTATTCCGGGCCAGCGTCAAGACCGTGAAGACGCGGAACAAGGCGCTGG
GAGTGGCGGTGGGCGGCGGGGTCGATGGCAGCCGGGACGAGCTGTTCCGCCGGAGCCCCCGGCCCAAGGG
CGACTTCTCCAGCCGGGCCCGCGAAGTGATTTCTCACATTGGCAAACTGAGAGATTTTCTTCTGGAACAC
AGGAAAGATTATATTAATGCTTATAGCCATACCATGTCTGAATATGGGAGGATGACAGACACAGAACGAG
ACCAGATAGACCAGGATGCCCAGATATTCATGAGGACCTGTTCAGAAGCAATTCAGCAACTACGAACAGA
AGCTCACAAGGAGATACATTCCCAGCAAGTGAAGGAGCACAGGACCGCTGTTTTGGATTTCATTGAAGAT
TACTTGAAAAGAGTATGTAAACTTTACTCAGAACAGAGAGCCATCCGAGTTAAAAGAGTGGTGGATAAGA
AAAGATTATCTAAGCTGGAACCAGAACCAAATACAAAGACAAGAGAATCCACATCTTCTGAGAAAGTTTC
ACAGAGTCCTTCAAAAGACTCTGAAGAAAACCCTGCCACTGAAGAACGTCCAGAAAAAATTTTGGCTGAA
ACACAACCTGAATTGGGAACGTGGGGAGATGGCAAAGGCGAAGATGAGTTATCCCCAGAAGAAATACAAA
TGTTTGAACAGGAAAATCAGCGACTAATTGGTGAAATGAACAGCTTGTTTGATGAAGTGAGGCAAATCGA
AGGGAGAGTGGTTGAGATTTCCAGACTCCAAGAGATATTCACGGAAAAGGTTTTGCAACAGGAAGCTGAG
ATTGACAGCATTCACCAGTTAGTTGTGGGGGCAACTGAAAATATCAAGGAAGGCAACGAAGACATAAGAG
AGGCCATTAAAAACAACGCTGGCTTCCGCGTGTGGATCCTCTTCTTCCTCGTGATGTGCTCCTTCTCCTT
GCTCTTCCTCGACTGGTACGACAGCTAG

Translation (335 aa):
MAVDITLLFRASVKTVKTRNKALGVAVGGGVDGSRDELFRRSPRPKGDFSSRAREVISHIGKLRDFLLEH
RKDYINAYSHTMSEYGRMTDTERDQIDQDAQIFMRTCSEAIQQLRTEAHKEIHSQQVKEHRTAVLDFIED
YLKRVCKLYSEQRAIRVKRVVDKKRLSKLEPEPNTKTRESTSSEKVSQSPSKDSEENPATEERPEKILAE
TQPELGTWGDGKGEDELSPEEIQMFEQENQRLIGEMNSLFDEVRQIEGRVVEISRLQEIFTEKVLQQEAE
IDSIHQLVVGATENIKEGNEDIREAIKNNAGFRVWILFFLVMCSFSLLFLDWYDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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