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Report for CCDS33647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33647.1 Public Homo sapiens 22 NPTXR 24 110 108 CCDS HistoryNCBI Gene:23467Re-query CCDS DB by CCDS ID:33647.1Re-query CCDS DB by GeneID:23467See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 33647.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333039.4 ENSP00000327545.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333039.4Link to Ensembl Protein Viewer:ENSP00000327545.3Re-query CCDS DB by Nucleotide ID:ENST00000333039Re-query CCDS DB by Protein ID:ENSP00000327545
Original member Current member NCBI NM_014293.4 NP_055108.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014293.4Link to Protein Sequence:NP_055108.2Re-query CCDS DB by Nucleotide ID:NM_014293Re-query CCDS DB by Protein ID:NP_055108Link to BLAST:NP_055108.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055108.2 500 O95502 500 100% 0 0

Chromosomal Locations for CCDS 33647.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 38822609 38822833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38823083 38823262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38826500 38826747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38828287 38828512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38843235 38843858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon CTG) with M at amino acid position 1

Nucleotide Sequence (1503 nt):
CTGAAGTTCCTGGCCGTGCTGCTGGCCGCGGGCATGCTGGCGTTCCTCGGTGCCGTCATCTGCATCATCG
CCAGCGTGCCCCTGGCGGCCAGCCCGGCGCGGGCGCTGCCCGGCGGCGCCGACAATGCTTCGGTCGCCTC
GGGCGCCGCCGCGTCCCCGGGCCCGCAGCGGAGCCTGAGCGCGCTGCACGGCGCGGGCGGTTCAGCCGGG
CCCCCCGCGCTGCCCGGGGCACCCGCGGCCAGCGCGCACCCGCTGCCGCCCGGGCCCCTGTTCAGCCGCT
TCCTGTGCACGCCGCTGGCTGCTGCCTGCCCGTCGGGGGCCCAGCAGGGGGACGCGGCGGGCGCTGCGCC
GGGCGAGCGCGAAGAGCTGCTGCTGCTGCAGAGCACGGCCGAGCAGCTGCGCCAGACGGCGCTGCAGCAG
GAGGCGCGCATCCGCGCCGACCAGGACACCATCCGTGAGCTCACCGGCAAGCTGGGCCGCTGCGAGAGCG
GCCTGCCGCGCGGCCTCCAGGGCGCCGGGCCCCGCCGCGACACCATGGCCGACGGGCCCTGGGACTCGCC
TGCGCTCATTCTGGAGCTGGAGGACGCCGTGCGCGCCCTGCGGGACCGCATCGACCGCCTGGAGCAGGAG
CTTCCAGCCCGTGTGAACCTCTCAGCTGCCCCAGCCCCAGTCTCTGCTGTGCCCACCGGCCTACACTCCA
AGATGGACCAGCTGGAGGGGCAGCTGCTGGCCCAGGTGCTGGCACTGGAGAAGGAGCGTGTGGCCCTCAG
CCACAGCAGCCGCCGGCAGAGGCAGGAAGTGGAAAAGGAGTTGGACGTCCTGCAGGGTCGTGTGGCTGAG
CTGGAGCACGGGTCCTCAGCCTACAGTCCTCCAGATGCCTTCAAGATCAGCATCCCCATCCGTAACAACT
ACATGTACGCCCGCGTGCGGAAGGCTCTGCCCGAGCTCTACGCATTCACCGCCTGCATGTGGCTGCGGTC
CAGGTCCAGCGGCACCGGCCAGGGCACCCCCTTCTCCTACTCAGTGCCCGGGCAGGCCAACGAGATTGTA
CTGCTAGAGGCGGGCCATGAGCCCATGGAGCTGCTGATCAACGACAAGGTGGCCCAGCTGCCCCTGAGCC
TGAAGGACAATGGCTGGCACCACATCTGCATCGCCTGGACCACAAGGGATGGCCTATGGTCTGCCTACCA
GGACGGGGAGCTGCAGGGCTCCGGTGAGAACCTGGCTGCCTGGCACCCCATCAAGCCTCATGGGATCCTT
ATCTTGGGCCAGGAGCAGGATACCCTGGGTGGCCGGTTTGATGCCACCCAGGCCTTTGTCGGTGACATTG
CCCAGTTTAACCTGTGGGACCACGCCCTGACACCAGCCCAGGTCCTGGGCATTGCCAACTGCACTGCGCC
ACTGCTGGGCAACGTCCTTCCCTGGGAAGACAAGTTGGTGGAGGCCTTTGGGGGTGCAACAAAGGCTGCC
TTCGATGTCTGCAAGGGGAGGGCCAAGGCATGA

Translation (500 aa):
MKFLAVLLAAGMLAFLGAVICIIASVPLAASPARALPGGADNASVASGAAASPGPQRSLSALHGAGGSAG
PPALPGAPAASAHPLPPGPLFSRFLCTPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQ
EARIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTMADGPWDSPALILELEDAVRALRDRIDRLEQE
LPARVNLSAAPAPVSAVPTGLHSKMDQLEGQLLAQVLALEKERVALSHSSRRQRQEVEKELDVLQGRVAE
LEHGSSAYSPPDAFKISIPIRNNYMYARVRKALPELYAFTACMWLRSRSSGTGQGTPFSYSVPGQANEIV
LLEAGHEPMELLINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGIL
ILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANCTAPLLGNVLPWEDKLVEAFGGATKAA
FDVCKGRAKA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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