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Report for CCDS33490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33490.1 Public Homo sapiens 20 TSHZ2 24 110 108 CCDS HistoryNCBI Gene:128553Re-query CCDS DB by CCDS ID:33490.1Re-query CCDS DB by GeneID:128553See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33490.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371497.10 ENSP00000360552.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371497.10Link to Ensembl Protein Viewer:ENSP00000360552.3Re-query CCDS DB by Nucleotide ID:ENST00000371497Re-query CCDS DB by Protein ID:ENSP00000360552
Original member Current member NCBI NM_173485.6 NP_775756.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173485.6Link to Protein Sequence:NP_775756.3Re-query CCDS DB by Nucleotide ID:NM_173485Re-query CCDS DB by Protein ID:NP_775756Link to BLAST:NP_775756.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775756.3 1034 Q9NRE2-1 1034 100% 0 0

Chromosomal Locations for CCDS 33490.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 52973294 52973333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 53253499 53256563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3105 nt):
ATGCCGAGGAGAAAACAGCAGGCACCCAAGCGGGCGGCAGGCTACGCCCAGGAGGAACAGCTGAAAGAAG
AGGAGGAAATAAAAGAAGAGGAGGAGGAGGAGGACAGCGGTTCAGTAGCTCAACTGCAGGGTGGCAATGA
CACAGGGACGGACGAGGAGCTAGAAACGGGCCCAGAGCAAAAAGGCTGCTTCAGCTACCAGAACTCTCCA
GGAAGTCATTTGTCCAATCAGGATGCCGAGAACGAGTCTCTGCTGAGTGACGCCAGTGATCAGGTGTCGG
ACATCAAGAGTGTCTGCGGCAGAGATGCCTCAGACAAGAAAGCACACACTCACGTCAGGCTTCCAAACGA
AGCACACAATTGCATGGATAAAATGACCGCTGTCTACGCCAACATCCTGTCGGATTCCTACTGGTCAGGC
CTGGGCCTTGGCTTCAAGCTGTCCAATAGTGAGAGGAGGAACTGTGACACCCGAAACGGCAGCAACAAGA
GTGATTTTGATTGGCACCAAGACGCTCTGTCCAAAAGCCTGCAGCAGAACTTGCCTTCTCGGTCCGTCTC
GAAACCCAGCCTGTTCAGCTCGGTGCAGTTGTACCGACAGAGCAGCAAGATGTGCGGGACTGTGTTCACA
GGGGCCAGCAGATTCCGATGCCGACAGTGCAGCGCGGCCTATGACACCCTAGTCGAGCTGACTGTGCACA
TGAATGAAACGGGCCACTATCAAGATGACAACCGCAAAAAGGACAAGCTCAGACCCACGAGCTATTCAAA
GCCCAGGAAAAGGGCTTTCCAGGATATGGACAAAGAGGATGCTCAAAAGGTTCTGAAATGTATGTTTTGT
GGCGACTCCTTTGATTCCCTCCAAGATTTGAGCGTCCACATGATTAAAACAAAACATTACCAAAAAGTGC
CTTTGAAGGAGCCAGTCCCAACCATTTCCTCGAAAATGGTCACCCCGGCTAAGAAACGCGTTTTTGATGT
CAATCGGCCGTGTTCCCCCGATTCAACCACAGGATCTTTTGCAGATTCTTTTTCTTCTCAGAAGAACGCC
AACTTGCAGTTGTCCTCCAACAACCGCTATGGCTACCAAAATGGAGCCAGCTACACCTGGCAGTTTGAGG
CCTGCAAGTCCCAGATCTTAAAGTGCATGGAGTGTGGGAGCTCCCATGACACCTTGCAGCAGCTCACCAC
CCACATGATGGTCACAGGTCACTTTCTCAAGGTCACCAGCTCTGCCTCCAAGAAAGGGAAGCAGCTGGTA
TTAGACCCGTTAGCAGTGGAGAAAATGCAGTCGTTGTCTGAGGCCCCAAACAGTGATTCTCTGGCTCCCA
AGCCATCCAGTAACTCAGCATCAGATTGTACAGCCTCTACAACTGAGTTAAAGAAAGAGAGTAAAAAAGA
AAGGCCAGAGGAAACCAGCAAGGATGAGAAAGTCGTGAAAAGCGAGGACTATGAAGATCCTCTACAAAAA
CCTTTAGACCCTACAATCAAATATCAATACCTAAGGGAGGAAGACTTGGAAGATGGCTCAAAGGGTGGAG
GGGACATTTTGAAATCTTTGGAAAATACTGTCACCACAGCCATCAACAAAGCCCAAAACGGGGCCCCCAG
CTGGAGTGCCTACCCCAGCATCCACGCAGCCTACCAGCTGTCTGAGGGCACCAAGCCGCCTTTGCCTATG
GGATCCCAGGTACTGCAGATCCGGCCTAATCTCACCAACAAGCTGAGGCCCATTGCACCAAAGTGGAAAG
TGATGCCACTGGTTTCTATGCCCACACACCTGGCCCCTTACACTCAAGTCAAGAAAGAGTCAGAAGACAA
AGATGAAGCGGTGAAGGAGTGTGGGAAAGAAAGTCCCCACGAAGAGGCCTCATCTTTCAGCCACAGTGAG
GGCGATTCTTTCCGCAAAAGTGAAACACCTCCAGAAGCCAAAAAGACCGAGCTGGGTCCCCTGAAGGAGG
AGGAGAAGCTGATGAAAGAGGGCAGCGAGAAGGAGAAACCCCAGCCCCTGGAGCCCACATCTGCTCTGAG
CAATGGGTGCGCCCTCGCCAACCACGCCCCGGCCCTGCCATGCATCAACCCACTCAGCGCCCTGCAGTCC
GTCCTGAACAATCACTTGGGCAAAGCCACGGAGCCCTTGCGCTCACCTTCCTGCTCCAGCCCAAGTTCAA
GCACAATTTCCATGTTCCACAAGTCGAATCTCAATGTCATGGACAAGCCGGTCTTGAGTCCTGCCTCCAC
AAGGTCAGCCAGCGTGTCCAGGCGCTACCTGTTTGAGAACAGCGATCAGCCCATTGACCTGACCAAGTCC
AAAAGCAAGAAAGCCGAGTCCTCGCAAGCACAATCTTGTATGTCCCCACCTCAGAAGCACGCTCTGTCTG
ACATCGCCGACATGGTCAAAGTCCTCCCCAAAGCCACCACCCCAAAGCCAGCCTCCTCCTCCAGGGTCCC
CCCCATGAAGCTGGAAATGGATGTCAGGCGCTTTGAGGATGTCTCCAGTGAAGTCTCAACTTTGCATAAA
AGAAAAGGCCGGCAGTCCAACTGGAATCCTCAGCATCTTCTGATTCTACAAGCCCAGTTTGCCTCGAGCC
TCTTCCAGACATCAGAGGGCAAATACCTGCTGTCTGATCTGGGCCCACAAGAGCGTATGCAAATCTCTAA
GTTTACGGGACTCTCAATGACCACTATCAGTCACTGGCTGGCCAACGTCAAGTACCAGCTTAGGAAAACG
GGCGGGACAAAATTTCTGAAAAACATGGACAAAGGCCACCCCATCTTTTATTGCAGTGACTGTGCCTCCC
AGTTCAGAACCCCTTCTACCTACATCAGTCACTTAGAATCTCACCTGGGTTTCCAAATGAAGGACATGAC
CCGCTTGTCAGTGGACCAGCAAAGCAAGGTGGAGCAAGAGATCTCCCGGGTATCGTCGGCTCAGAGGTCT
CCAGAAACAATAGCTGCCGAAGAGGACACAGACTCTAAATTCAAGTGTAAGTTGTGCTGTCGGACATTTG
TGAGCAAACATGCGGTAAAACTCCACCTAAGCAAAACGCACAGCAAGTCACCCGAACACCATTCACAGTT
TGTAACAGACGTGGATGAAGAATAG

Translation (1034 aa):
MPRRKQQAPKRAAGYAQEEQLKEEEEIKEEEEEEDSGSVAQLQGGNDTGTDEELETGPEQKGCFSYQNSP
GSHLSNQDAENESLLSDASDQVSDIKSVCGRDASDKKAHTHVRLPNEAHNCMDKMTAVYANILSDSYWSG
LGLGFKLSNSERRNCDTRNGSNKSDFDWHQDALSKSLQQNLPSRSVSKPSLFSSVQLYRQSSKMCGTVFT
GASRFRCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMFC
GDSFDSLQDLSVHMIKTKHYQKVPLKEPVPTISSKMVTPAKKRVFDVNRPCSPDSTTGSFADSFSSQKNA
NLQLSSNNRYGYQNGASYTWQFEACKSQILKCMECGSSHDTLQQLTTHMMVTGHFLKVTSSASKKGKQLV
LDPLAVEKMQSLSEAPNSDSLAPKPSSNSASDCTASTTELKKESKKERPEETSKDEKVVKSEDYEDPLQK
PLDPTIKYQYLREEDLEDGSKGGGDILKSLENTVTTAINKAQNGAPSWSAYPSIHAAYQLSEGTKPPLPM
GSQVLQIRPNLTNKLRPIAPKWKVMPLVSMPTHLAPYTQVKKESEDKDEAVKECGKESPHEEASSFSHSE
GDSFRKSETPPEAKKTELGPLKEEEKLMKEGSEKEKPQPLEPTSALSNGCALANHAPALPCINPLSALQS
VLNNHLGKATEPLRSPSCSSPSSSTISMFHKSNLNVMDKPVLSPASTRSASVSRRYLFENSDQPIDLTKS
KSKKAESSQAQSCMSPPQKHALSDIADMVKVLPKATTPKPASSSRVPPMKLEMDVRRFEDVSSEVSTLHK
RKGRQSNWNPQHLLILQAQFASSLFQTSEGKYLLSDLGPQERMQISKFTGLSMTTISHWLANVKYQLRKT
GGTKFLKNMDKGHPIFYCSDCASQFRTPSTYISHLESHLGFQMKDMTRLSVDQQSKVEQEISRVSSAQRS
PETIAAEEDTDSKFKCKLCCRTFVSKHAVKLHLSKTHSKSPEHHSQFVTDVDEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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