CCDS Report for Consensus CDS

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Report for CCDS33469.2 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
33469.2	Public	Homo sapiens	20	LPIN3	24	110	108

Public Note for CCDS 33469.1
The coding region has been updated to represent an alternative splice site that is more supported by the available transcript and protein data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33469.2

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000632009.1	ENSP00000487971.1		Accepted	alive
		NCBI	NM_001301860.2	NP_001288789.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001288789.1	852	Q9BQK8-2	852	100%	0	0

Chromosomal Locations for CCDS 33469.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)

Genome Browser links:

Chromosome	Start	Stop
20	41345804	41345995
20	41347552	41347647
20	41348619	41348887
20	41349089	41349172
20	41349774	41349894
20	41350055	41350397
20	41351821	41351920
20	41352060	41352220
20	41352606	41352699
20	41352798	41352867
20	41354645	41354737
20	41354820	41354863
20	41355896	41356034
20	41357040	41357188
20	41357361	41357447
20	41357882	41358034
20	41358237	41358351
20	41358439	41358542
20	41358722	41358866

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2559 nt):
ATGAACTACGTGGGGCAGCTGGCGGAGACGGTGTTTGGGACGGTGAAGGAGCTGTACCGGGGCCTGAACC CAGCCACACTGAGCGGCGGCATTGACGTGCTGGTGGTGAAGCAGGTGGACGGCTCGTTCCGGTGCTCACC CTTCCACGTGCGTTTTGGCAAGCTGGGCGTCCTGCGGTCGCGGGAGAAGGTGGTAGACATTGAGCTCAAT GGGGAGCCTGTGGACTTGCACATGAAGCTTGGGGACAGCGGGGAGGCCTTCTTTGTTCAGGAGCTGGAGA GCGATGATGAACATGTGCCTCCCGGCCTGTGCACCTCACCCATCCCTTGGGGGGGTCTGTCTGGCTTCCC CTCGGACTCCCAGCTGGGCACTGCCAGTGAGCCTGAGGGCCTCGTCATGGCAGGCACGGCCTCCACTGGG CGGAGGAAGAGGCGTCGCAGGAGGAAACCCAAGCAGAAAGAGGATGCAGTGGCAACTGATTCTAGTCCAG AGGAACTGGAGGCAGGCGCTGAGAGTGAGCTATCCCTGCCGGAAAAGCTGAGGCCAGAGCCCCCAGGCAG TGTCCAGTTGGAAGAGAAGTCTTCACTGCAGCCCAAAGACATCTACCCCTACTCGGATGGCGAGTGGCCC CCCCAGGCCAGCCTCTCAGCAGGTGAGCTAACATCCCCTAAGAGCGACTCGGAGCTGGAGGTGCGGACCC CGGAGCCCAGTCCCCTAAGAGCCGAGTCCCACATGCAGTGGGCCTGGGGGAGGCTGCCTAAGGTGGCCAG AGCTGAGCGGCCCGAGTCCTCAGTGGTCCTTGAAGGCAGAGCTGGGGCAACCTCTCCTCCTCGGGGAGGA CCCAGCACTCCCTCTACCTCTGTGGCTGGCGGCGTGGACCCTTTGGGACTCCCAATCCAGCAAACAGAGG CTGGTGCCGACCTTCAGCCTGACACAGAGGATCCCACTCTAGTGGGTCCCCCTCTCCACACCCCAGAGAC AGAGGAAAGCAAGACTCAGAGCTCTGGGGACATGGGCCTCCCTCCTGCCTCCAAGTCATGGAGCTGGGCC ACTCTGGAGGTTCCAGTTCCCACCGGGCAGCCAGAGAGGGTCTCCAGGGGGAAAGGCTCCCCAAAGAGAA GCCAGCACCTGGGCCCCAGTGACATCTACCTGGATGACTTGCCCTCCCTGGACTCTGAGAATGCAGCGCT TTACTTCCCCCAAAGTGACTCTGGGCTGGGGGCCAGAAGATGGAGTGAACCCAGCAGTCAGAAGTCCCTG AGGGACCCCAACCCTGAACATGAACCTGAACCCACTCTGGACACAGTGGATACAATAGCACTGTCCCTCT GTGGTGGACTGGCTGACAGCCGGGACATCTCCCTAGAGAAATTCAACCAGCACAGCGTCTCTTACCAGGA CCTCACCAAAAACCCCGGACTTTTGGATGACCCAAACCTAGTGGTGAAAATCAATGGAAAGCATTATAAC TGGGCTGTGGCTGCCCCCATGATCCTCTCCCTGCAAGCCTTCCAGAAAAACTTGCCCAAGAGCACCATGG ACAAGCTGGAGAGGGAGAAGATGCCCCGGAAGGGTGGGCGATGGTGGTTTTCCTGGCGACGCAGGGACTT CCTGGCCGAGGAGCGCAGTGCCCAGAAGGAGAAGACTGCAGCCAAGGAGCAGCAGGGGGAGAAGACAGAA GTCCTGAGCAGTGATGACGATGCCCCAGACAGCCCTGTGATCCTGGAGATCCCCTCCTTGCCACCCTCCA CTCCACCCTCCACTCCTACCTACAAGAAGTCCCTCCGCCTCTCCTCCGATCAGATCCGGCGCCTGAACCT GCAAGAAGGTGCCAATGATGTGGTCTTCAGCGTGACCACTCAGTACCAGGGCACCTGCCGCTGCAAGGCC ACCATCTACCTGTGGAAATGGGACGACAAGGTGGTCATCTCTGACATCGACGGCACCATCACCAAGTCAG ATGCTCTGGGCCATATCCTGCCCCAGCTGGGGAAAGACTGGACACACCAGGGCATCACCAGTCTCTATCA CAAAATCCAACTAAATGGGTACAAGTTCCTGTACTGCTCGGCGCGGGCCATTGGCATGGCGGACCTCACC AAGGGGTACCTGCAGTGGGTGAGCGAGGGGGGCTGTAGCCTCCCCAAGGGCCCCATCCTTCTGTCTCCCA GCAGCCTCTTCTCTGCCCTCCACAGAGAGGTGATCGAGAAGAAACCAGAGGTGTTCAAGGTCGCCTGCCT GAGTGACATCCAGCAGCTGTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGAATAGGCCCAAT GATGTCTTTGCCTACCGGCAGGTGGGCCTGCCTGAGTCACGCATCTTCACAGTCAACCCCCGGGGAGAGC TCATCCAGGAGCTCATAAAGAACCACAAATCCACGTATGAGCGGCTTGGTGAAGTGGTCGAGCTCCTCTT CCCACCTGTGGCCCGTGGCCCCAGCACAGACCTGGCCAACCCTGAATACAGTAACTTCTGCTACTGGCGG GAGCCACTGCCTGCTGTGGACCTTGATACCCTGGACTGA
Translation (852 aa):
MNYVGQLAETVFGTVKELYRGLNPATLSGGIDVLVVKQVDGSFRCSPFHVRFGKLGVLRSREKVVDIELN GEPVDLHMKLGDSGEAFFVQELESDDEHVPPGLCTSPIPWGGLSGFPSDSQLGTASEPEGLVMAGTASTG RRKRRRRRKPKQKEDAVATDSSPEELEAGAESELSLPEKLRPEPPGSVQLEEKSSLQPKDIYPYSDGEWP PQASLSAGELTSPKSDSELEVRTPEPSPLRAESHMQWAWGRLPKVARAERPESSVVLEGRAGATSPPRGG PSTPSTSVAGGVDPLGLPIQQTEAGADLQPDTEDPTLVGPPLHTPETEESKTQSSGDMGLPPASKSWSWA TLEVPVPTGQPERVSRGKGSPKRSQHLGPSDIYLDDLPSLDSENAALYFPQSDSGLGARRWSEPSSQKSL RDPNPEHEPEPTLDTVDTIALSLCGGLADSRDISLEKFNQHSVSYQDLTKNPGLLDDPNLVVKINGKHYN WAVAAPMILSLQAFQKNLPKSTMDKLEREKMPRKGGRWWFSWRRRDFLAEERSAQKEKTAAKEQQGEKTE VLSSDDDAPDSPVILEIPSLPPSTPPSTPTYKKSLRLSSDQIRRLNLQEGANDVVFSVTTQYQGTCRCKA TIYLWKWDDKVVISDIDGTITKSDALGHILPQLGKDWTHQGITSLYHKIQLNGYKFLYCSARAIGMADLT KGYLQWVSEGGCSLPKGPILLSPSSLFSALHREVIEKKPEVFKVACLSDIQQLFLPHGQPFYAAFGNRPN DVFAYRQVGLPESRIFTVNPRGELIQELIKNHKSTYERLGEVVELLFPPVARGPSTDLANPEYSNFCYWR EPLPAVDLDTLD

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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