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Report for CCDS3332.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3332.2 Under review, update Homo sapiens 3 LMLN 24 110 108 CCDS HistoryNCBI Gene:89782Re-query CCDS DB by CCDS ID:3332.2Re-query CCDS DB by GeneID:89782See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 3332.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330198.8 ENSP00000328829.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000330198.8Link to Ensembl Protein Viewer:ENSP00000328829.5Re-query CCDS DB by Nucleotide ID:ENST00000330198Re-query CCDS DB by Protein ID:ENSP00000328829
Original member Current member NCBI NM_033029.4 NP_149018.3 Pending alive Link to Nucleotide Sequence:NM_033029.4Link to Protein Sequence:NP_149018.3Re-query CCDS DB by Nucleotide ID:NM_033029Re-query CCDS DB by Protein ID:NP_149018Link to BLAST:NP_149018.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149018.3 647 Q96KR4-1 647 100% 0 0

Chromosomal Locations for CCDS 3332.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 197960246 197960440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197974377 197974474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197975042 197975072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197976029 197976111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197976598 197976715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197980326 197980504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197983943 197984048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197985796 197985890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197990559 197990676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197996175 197996282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 197999266 197999342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 198019253 198019385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 198021446 198021605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 198024658 198024788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 198035833 198036043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 198038567 198038667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1944 nt):
ATGGCGGCCGAATGGGGCGGAGGAGTGGGTTACTCGGGCTCAGGCCCGGGCCGGAGCCGGTGGCGCTGGA
GCGGGTCTGTGTGGGTCCGAAGCGTTTTACTCCTGTTGGGCGGGCTCCGGGCCAGCGCCACATCTACTCC
CGTCTCCTTGGGCAGTTCCCCTCCCTGCCGGCACCACGTCCCCTCTGACACTGAGGTCATAAATAAAGTT
CATCTTAAGGCAAATCATGTGGTCAAGAGAGATGTTGATGAGCATTTAAGAATCAAGACTGTCTATGATA
AAAGTGTTGAAGAGTTGCTCCCTGAGAAAAAGAATCTTGTAAAGAACAAGCTTTTCCCACAAGCGATTTC
TTATTTAGAGAAGACTTTTCAGGTCCGTCGACCTGCGGGCACTATCTTACTTAGCAGACAATGTGCAACA
AACCAATACCTCCGGAAGGAAAACGATCCTCACAGGTACTGCACCGGGGAGTGTGCCGCACACACAAAGT
GCGGCCCCGTTATTGTTCCTGAGGAACATCTCCAGCAATGCCGGGTCTACCGTGGGGGTAAGTGGCCTCA
TGGAGCAGTGGGTGTGCCAGACCAAGAAGGCATCTCAGATGCAGACTTTGTTCTTTACGTTGGTGCTCTG
GCCACCGAGAGATGCAGCCATGAAAACATCATCTCTTATGCAGCCTATTGTCAGCAGGAAGCAAACATGG
ACAGGCCAATAGCAGGATATGCTAACCTGTGTCCAAATATGATCTCTACCCAGCCTCAGGAGTTTGTTGG
GATGCTGTCCACAGTGAAACATGAGGTTATTCATGCCCTGGGTTTCTCTGCTGGGCTGTTTGCATTCTAC
CATGATAAAGATGGAAATCCTCTCACTTCAAGATTTGCAGATGGCCTCCCACCTTTTAATTATAGTCTGG
GATTATATCAATGGAGTGATAAAGTAGTTCGAAAAGTGGAGAGATTATGGGATGTTCGAGATAATAAGAT
AGTTCGTCACACTGTGTATCTCCTGGTAACGCCTCGTGTTGTTGAGGAAGCACGAAAACATTTTGATTGT
CCAGTTCTAGAGGGAATGGAACTTGAAAATCAAGGTGGTGTGGGCACTGAGCTCAACCATTGGGAAAAAA
GGTTATTAGAGAATGAAGCGATGACTGGTTCTCACACTCAGAATCGAGTACTCTCTCGAATCACTCTGGC
ATTAATGGAGGACACTGGGAGACAGATGCTGAGCCCTTACTGTGACACGCTCAGAAGTAACCCACTGCAG
CTAACTTGCAGACAGGACCAGAGAGCAGTTGCCGTGTGTAATTTGCAGAAGTTCCCTAAGCCTTTACCAC
AGGAATACCAGTACTTTGATGAACTCAGTGGAATACCTGCAGAAGATTTGCCTTATTATGGTGGCTCCGT
GGAAATTGCTGACTACTGCCCTTTCAGTCAGGAATTCAGTTGGCATTTAAGTGGTGAATATCAGCGCAGC
TCAGATTGTAGAATATTGGAAAATCAACCAGAAATTTTTAAGAACTATGGCGCTGAAAAGTATGGACCTC
ATTCCGTTTGTCTAATTCAGAAATCAGCATTCGTTATGGAGAAGTGTGAGAGGAAGCTGAGTTACCCAGA
CTGGGGAAGCGGATGCTATCAGGTTTCTTGTTCTCCTCAAGGTCTGAAAGTTTGGGTCCAAGATACTTCA
TATTTGTGTAGTCGGGCTGGGCAGGTCCTCCCTGTCAGTATCCAGATGAATGGCTGGATTCACGATGGAA
ACCTGCTCTGCCCATCATGTTGGGACTTCTGTGAGCTCTGTCCTCCAGAAACAGATCCTCCAGCCACTAA
CCTGACCCGAGCTCTGCCACTTGATCTTTGTTCCTGTTCCTCGAGCCTGGTGGTCACCCTCTGGCTTCTG
CTAGGCAATCTGTTTCCTCTGCTGGCTGGATTTCTTCTGTGTATATGGCACTAG

Translation (647 aa):
MAAEWGGGVGYSGSGPGRSRWRWSGSVWVRSVLLLLGGLRASATSTPVSLGSSPPCRHHVPSDTEVINKV
HLKANHVVKRDVDEHLRIKTVYDKSVEELLPEKKNLVKNKLFPQAISYLEKTFQVRRPAGTILLSRQCAT
NQYLRKENDPHRYCTGECAAHTKCGPVIVPEEHLQQCRVYRGGKWPHGAVGVPDQEGISDADFVLYVGAL
ATERCSHENIISYAAYCQQEANMDRPIAGYANLCPNMISTQPQEFVGMLSTVKHEVIHALGFSAGLFAFY
HDKDGNPLTSRFADGLPPFNYSLGLYQWSDKVVRKVERLWDVRDNKIVRHTVYLLVTPRVVEEARKHFDC
PVLEGMELENQGGVGTELNHWEKRLLENEAMTGSHTQNRVLSRITLALMEDTGRQMLSPYCDTLRSNPLQ
LTCRQDQRAVAVCNLQKFPKPLPQEYQYFDELSGIPAEDLPYYGGSVEIADYCPFSQEFSWHLSGEYQRS
SDCRILENQPEIFKNYGAEKYGPHSVCLIQKSAFVMEKCERKLSYPDWGSGCYQVSCSPQGLKVWVQDTS
YLCSRAGQVLPVSIQMNGWIHDGNLLCPSCWDFCELCPPETDPPATNLTRALPLDLCSCSSSLVVTLWLL
LGNLFPLLAGFLLCIWH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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