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Report for CCDS33240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33240.1 Public Homo sapiens 2 SMYD1 24 110 108 CCDS HistoryNCBI Gene:150572Re-query CCDS DB by CCDS ID:33240.1Re-query CCDS DB by GeneID:150572See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33240.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000419482.7 ENSP00000393453.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000419482.7Link to Ensembl Protein Viewer:ENSP00000393453.2Re-query CCDS DB by Nucleotide ID:ENST00000419482Re-query CCDS DB by Protein ID:ENSP00000393453
Original member Current member NCBI NM_198274.4 NP_938015.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198274.4Link to Protein Sequence:NP_938015.1Re-query CCDS DB by Nucleotide ID:NM_198274Re-query CCDS DB by Protein ID:NP_938015Link to BLAST:NP_938015.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_938015.1 490 Q8NB12 490 100% 0 0

Chromosomal Locations for CCDS 33240.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88067865 88068001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88084316 88084492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88087862 88088075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88091012 88091142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88093517 88093555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88096595 88096784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88103058 88103150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88106325 88106488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88108371 88108539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88110354 88110512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGACAATAGGGAGAATGGAGAACGTGGAGGTCTTCACCGCTGAGGGCAAAGGAAGGGGTCTGAAGGCCA
CCAAGGAGTTCTGGGCTGCAGATATCATCTTTGCTGAGCGGGCTTATTCCGCAGTGGTTTTTGACAGCCT
TGTTAATTTTGTGTGCCACACCTGCTTCAAGAGGCAGGAGAAGCTCCATCGCTGTGGGCAGTGCAAGTTT
GCCCATTACTGCGACCGCACCTGCCAGAAGGATGCTTGGCTGAACCACAAGAATGAATGTTCGGCCATCA
AGAGATATGGGAAGGTGCCCAATGAGAACATCAGGCTGGCGGCGCGCATCATGTGGCGGGTGGAGAGAGA
AGGCACCGGGCTCACGGAGGGCTGCCTGGTGTCCGTGGACGACTTGCAGAACCACGTGGAGCACTTTGGG
GAGGAGGAGCAGAAGGACCTGCGGGTGGACGTGGACACATTCTTGCAGTACTGGCCGCCGCAGAGCCAGC
AGTTCAGCATGCAGTACATCTCGCACATCTTCGGAGTGATTAACTGCAACGGTTTTACTCTCAGTGATCA
GAGAGGCCTGCAGGCCGTGGGCGTAGGCATCTTCCCCAACCTGGGCCTGGTGAACCATGACTGTTGGCCC
AACTGTACTGTCATATTTAACAATGGCAATCATGAGGCAGTGAAATCCATGTTTCATACCCAGATGAGAA
TTGAGCTCCGGGCCCTAGGCAAGATCTCAGAAGGAGAGGAGCTGACTGTGTCCTATATTGACTTCCTCAA
CGTTAGTGAAGAACGCAAGAGGCAGCTGAAGAAGCAGTACTACTTTGACTGCACATGTGAACACTGCCAG
AAAAAACTGAAGGATGACCTCTTCCTGGGGGTGAAAGACAACCCCAAGCCCTCTCAGGAAGTGGTGAAGG
AGATGATACAATTCTCCAAGGATACATTGGAAAAGATAGACAAGGCTCGTTCCGAGGGTTTGTATCATGA
GGTTGTGAAATTATGCCGGGAGTGCCTGGAGAAGCAGGAGCCAGTGTTTGCTGACACCAACATCTACATG
CTGCGGATGCTGAGCATTGTTTCGGAGGTCCTTTCCTACCTCCAGGCCTTTGAGGAGGCCTCGTTCTATG
CCAGGAGGATGGTGGACGGCTATATGAAGCTCTACCACCCCAACAATGCCCAACTGGGCATGGCCGTGAT
GCGGGCAGGGCTGACCAACTGGCATGCTGGTAACATTGAGGTGGGGCACGGGATGATCTGCAAAGCCTAT
GCCATTCTCCTGGTGACACACGGACCCTCCCACCCCATCACTAAGGACTTAGAGGCCATGCGGGTGCAGA
CGGAGATGGAGCTACGCATGTTCCGCCAGAACGAATTCATGTACTACAAGATGCGCGAGGCTGCCCTGAA
CAACCAGCCCATGCAGGTCATGGCCGAGCCCAGCAATGAGCCATCCCCAGCTCTGTTCCACAAGAAGCAA
TGA

Translation (490 aa):
MTIGRMENVEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQEKLHRCGQCKF
AHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFG
EEEQKDLRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWP
NCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQ
KKLKDDLFLGVKDNPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYM
LRMLSIVSEVLSYLQAFEEASFYARRMVDGYMKLYHPNNAQLGMAVMRAGLTNWHAGNIEVGHGMICKAY
AILLVTHGPSHPITKDLEAMRVQTEMELRMFRQNEFMYYKMREAALNNQPMQVMAEPSNEPSPALFHKKQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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