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Report for CCDS3316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3316.1 Public Homo sapiens 3 TM4SF19 24 110 108 CCDS HistoryNCBI Gene:116211Re-query CCDS DB by CCDS ID:3316.1Re-query CCDS DB by GeneID:116211See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3316.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273695.4 ENSP00000273695.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000273695.4Link to Ensembl Protein Viewer:ENSP00000273695.4Re-query CCDS DB by Nucleotide ID:ENST00000273695Re-query CCDS DB by Protein ID:ENSP00000273695
Original member Current member EBI ENST00000442633.1 ENSP00000405973.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442633.1Link to Ensembl Protein Viewer:ENSP00000405973.1Re-query CCDS DB by Nucleotide ID:ENST00000442633Re-query CCDS DB by Protein ID:ENSP00000405973
Original member Current member NCBI NM_138461.4 NP_612470.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138461.4Link to Protein Sequence:NP_612470.2Re-query CCDS DB by Nucleotide ID:NM_138461Re-query CCDS DB by Protein ID:NP_612470Link to BLAST:NP_612470.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612470.2 209 Q96DZ7-1 209 100% 0 0

Chromosomal Locations for CCDS 3316.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 196323817 196323997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196324271 196324440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196326955 196327032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196327390 196327590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGGTGTCCTCTCCCTGCACGCAGGCAAGCTCACGGACTTGCTCCCGTATCCTGGGACTGAGCCTTGGGA
CTGCAGCCCTGTTTGCTGCTGGGGCCAACGTGGCACTCCTCCTTCCTAACTGGGATGTCACCTACCTGTT
GAGGGGCCTCCTTGGCAGGCATGCCATGCTGGGAACTGGGCTCTGGGGAGGAGGCCTCATGGTACTCACT
GCAGCTATCCTCATCTCCTTGATGGGCTGGAGATACGGCTGCTTCAGTAAGAGTGGGCTCTGTCGAAGCG
TGCTTACTGCTCTGTTGTCAGGTGGCCTGGCTTTACTTGGAGCCCTGATTTGCTTTGTCACTTCTGGAGT
TGCTCTGAAAGATGGTCCTTTTTGCATGTTTGATGTTTCATCCTTCAATCAGACACAAGCTTGGAAATAT
GGTTACCCATTCAAAGACCTGCATAGTAGGAATTATCTGTATGACCGTTCGCTCTGGAACTCCGTCTGCC
TGGAGCCCTCTGCAGCTGTTGTCTGGCACGTGTCCCTCTTCTCCGCCCTTCTGTGCATCAGCCTGCTCCA
GCTTCTCCTGGTGGTCGTTCATGTCATCAACAGCCTCCTGGGCCTTTTCTGCAGCCTCTGCGAGAAGTGA

Translation (209 aa):
MVSSPCTQASSRTCSRILGLSLGTAALFAAGANVALLLPNWDVTYLLRGLLGRHAMLGTGLWGGGLMVLT
AAILISLMGWRYGCFSKSGLCRSVLTALLSGGLALLGALICFVTSGVALKDGPFCMFDVSSFNQTQAWKY
GYPFKDLHSRNYLYDRSLWNSVCLEPSAAVVWHVSLFSALLCISLLQLLLVVVHVINSLLGLFCSLCEK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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