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Report for CCDS33144.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33144.2 Public Homo sapiens 2 GRHL1 24 110 108 CCDS HistoryNCBI Gene:29841Re-query CCDS DB by CCDS ID:33144.2Re-query CCDS DB by GeneID:29841See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 33144.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33144.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324907.14 ENSP00000324693.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324907.14Link to Ensembl Protein Viewer:ENSP00000324693.9Re-query CCDS DB by Nucleotide ID:ENST00000324907Re-query CCDS DB by Protein ID:ENSP00000324693
Original member Current member NCBI NM_198182.3 NP_937825.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198182.3Link to Protein Sequence:NP_937825.2Re-query CCDS DB by Nucleotide ID:NM_198182Re-query CCDS DB by Protein ID:NP_937825Link to BLAST:NP_937825.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937825.2 618 Q9NZI5-1 618 100% 0 0

Chromosomal Locations for CCDS 33144.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 9951834 9951853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9954915 9955101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9958786 9958856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9961046 9961436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9962455 9962531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9963886 9964042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9964235 9964346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9965287 9965381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9986124 9986282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9990696 9990747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9992007 9992146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9993207 9993244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9995879 9995970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9996316 9996401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9998965 9999029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10000593 10000707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGACACAGGAGTACGACAACAAACGGCCAGTGTTGGTTCTTCAGAATGAAGCACTTTATCCACAGCGGC
GGTCCTACACTAGTGAGGATGAGGCCTGGAAATCCTTCCTGGAAAACCCTCTCACTGCAGCGACCAAAGC
GATGATGAGCATCAATGGAGATGAAGACAGCGCCGCTGCGCTGGGCCTGCTCTATGACTACTACAAGGTT
CCAAGAGAGAGAAGGTCATCAACAGCAAAGCCAGAGGTGGAGCACCCTGAGCCAGATCACAGCAAAAGAA
ACAGCATACCAATTGTGACAGAGCAGCCCCTCATCTCTGCTGGAGAAAACAGAGTGCAAGTACTGAAAAA
TGTGCCATTTAACATTGTCCTTCCCCATGGCAACCAGCTGGGCATTGATAAGAGAGGCCATCTGACAGCT
CCAGATACGACAGTCACTGTCTCCATAGCAACGATGCCTACCCACTCCATCAAGACAGAAACCCAGCCAC
ATGGCTTCGCTGTGGGAATCCCCCCAGCAGTGTATCATCCTGAGCCCACTGAGCGGGTGGTGGTTTTCGA
TCGGAATCTCAATACTGACCAGTTCAGCTCTGGTGCTCAAGCCCCAAATGCTCAAAGGCGAACTCCAGAC
TCGACCTTCTCAGAGACCTTCAAGGAAGGCGTTCAGGAGGTTTTCTTCCCCTCGGATCTCAGTCTGCGGA
TGCCTGGCATGAATTCAGAGGACTATGTTTTTGACAGTGTTTCTGGGAACAACTTTGAATATACCCTAGA
AGCTTCAAAATCACTTCGACAGAAGCCAGGAGACAGTACCATGACGTACCTGAACAAAGGCCAGTTCTAT
CCCATCACCTTGAAGGAGGTGAGCAGCAGTGAAGGAATCCATCATCCCATCAGCAAAGTTCGAAGTGTGA
TCATGGTGGTTTTTGCTGAAGACAAAAGCAGAGAAGATCAGTTAAGGCATTGGAAGTACTGGCACTCCCG
GCAGCACACCGCTAAACAAAGATGCATTGACATAGCTGACTATAAAGAAAGCTTCAACACTATCAGTAAC
ATCGAGGAGATTGCGTATAACGCCATTTCCTTCACATGGGACATCAACGATGAAGCAAAGGTTTTCATCT
CTGTGAACTGCTTAAGCACAGATTTCTCTTCCCAGAAGGGAGTGAAGGGGTTGCCTCTTAACATTCAAGT
TGATACCTATAGTTACAACAACCGCAGCAACAAGCCTGTGCACCGGGCCTACTGCCAGATCAAGGTCTTC
TGTGACAAGGGAGCTGAGCGGAAAATCAGGGATGAAGAACGAAAGCAAAGCAAAAGAAAAGTTTCTGATG
TTAAAGTGCCACTGCTTCCCTCTCACAAGCGAATGGATATCACAGTTTTCAAACCCTTCATTGATCTCGA
TACTCAGCCTGTCCTCTTCATTCCTGACGTGCACTTTGCCAACTTGCAGCGGGGCACTCATGTCCTTCCC
ATTGCCTCTGAAGAATTGGAGGGTGAAGGCTCTGTCTTGAAAAGGGGGCCGTACGGCACAGAAGATGACT
TTGCTGTCCCTCCTTCTACCAAGCTGGCCCGGATAGAAGAACCAAAGAGAGTGCTGCTCTACGTTCGAAA
GGAGTCAGAAGAAGTCTTTGATGCCCTGATGCTCAAAACCCCATCTTTGAAGGGCTTGATGGAAGCTATC
TCAGACAAATACGATGTTCCCCATGACAAGATTGGGAAAATATTCAAGAAGTGTAAAAAGGGGATCCTGG
TGAACATGGACGACAACATTGTGAAGCATTACTCCAATGAGGACACCTTCCAGCTGCAGATTGAAGAAGC
CGGGGGGTCTTACAAGCTCACCCTGACGGAGATCTAA

Translation (618 aa):
MTQEYDNKRPVLVLQNEALYPQRRSYTSEDEAWKSFLENPLTAATKAMMSINGDEDSAAALGLLYDYYKV
PRERRSSTAKPEVEHPEPDHSKRNSIPIVTEQPLISAGENRVQVLKNVPFNIVLPHGNQLGIDKRGHLTA
PDTTVTVSIATMPTHSIKTETQPHGFAVGIPPAVYHPEPTERVVVFDRNLNTDQFSSGAQAPNAQRRTPD
STFSETFKEGVQEVFFPSDLSLRMPGMNSEDYVFDSVSGNNFEYTLEASKSLRQKPGDSTMTYLNKGQFY
PITLKEVSSSEGIHHPISKVRSVIMVVFAEDKSREDQLRHWKYWHSRQHTAKQRCIDIADYKESFNTISN
IEEIAYNAISFTWDINDEAKVFISVNCLSTDFSSQKGVKGLPLNIQVDTYSYNNRSNKPVHRAYCQIKVF
CDKGAERKIRDEERKQSKRKVSDVKVPLLPSHKRMDITVFKPFIDLDTQPVLFIPDVHFANLQRGTHVLP
IASEELEGEGSVLKRGPYGTEDDFAVPPSTKLARIEEPKRVLLYVRKESEEVFDALMLKTPSLKGLMEAI
SDKYDVPHDKIGKIFKKCKKGILVNMDDNIVKHYSNEDTFQLQIEEAGGSYKLTLTEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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