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Report for CCDS3306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3306.1 Public Homo sapiens 3 LRRC15 24 110 108 CCDS HistoryNCBI Gene:131578Re-query CCDS DB by CCDS ID:3306.1Re-query CCDS DB by GeneID:131578See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3306.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347624.4 ENSP00000306276.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000347624.4Link to Ensembl Protein Viewer:ENSP00000306276.4Re-query CCDS DB by Nucleotide ID:ENST00000347624Re-query CCDS DB by Protein ID:ENSP00000306276
Original member Current member NCBI NM_130830.5 NP_570843.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_130830.5Link to Protein Sequence:NP_570843.2Re-query CCDS DB by Nucleotide ID:NM_130830Re-query CCDS DB by Protein ID:NP_570843Link to BLAST:NP_570843.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570843.2 581 Q8TF66-1 581 100% 0 0

Chromosomal Locations for CCDS 3306.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 194359298 194361043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGCCACTGAAGCATTATCTCCTTTTGCTGGTGGGCTGCCAAGCCTGGGGTGCAGGGTTGGCCTACCATG
GCTGCCCTAGCGAGTGTACCTGCTCCAGGGCCTCCCAGGTGGAGTGCACCGGGGCACGCATTGTGGCAGT
GCCCACCCCTCTGCCCTGGAACGCCATGAGCCTGCAGATCCTCAACACGCACATCACTGAACTCAATGAG
TCCCCGTTCCTCAATATCTCAGCCCTCATCGCCCTGAGGATTGAGAAGAATGAGCTGTCGCGCATCACGC
CTGGGGCCTTCCGAAACCTGGGCTCGCTGCGCTATCTCAGCCTCGCCAACAACAAGCTGCAGGTTCTGCC
CATCGGCCTCTTCCAGGGCCTGGACAGCCTCGAGTCTCTCCTTCTGTCCAGTAACCAGCTGTTGCAGATC
CAGCCGGCCCACTTCTCCCAGTGCAGCAACCTCAAGGAGCTGCAGTTGCACGGCAACCACCTGGAATACA
TCCCTGACGGAGCCTTCGACCACCTGGTAGGACTCACGAAGCTCAATCTGGGCAAGAATAGCCTCACCCA
CATCTCACCCAGGGTCTTCCAGCACCTGGGCAACCTCCAGGTCCTCCGGCTGTATGAGAACAGGCTCACG
GATATCCCCATGGGCACTTTTGATGGGCTTGTTAACCTGCAGGAACTGGCTCTGCAGCAGAACCAGATTG
GACTGCTCTCCCCTGGTCTCTTCCACAACAACCACAACCTCCAGAGACTCTACCTGTCCAACAACCACAT
CTCCCAGCTGCCACCCAGCGTCTTCATGCAGCTGCCCCAGCTCAACCGTCTTACTCTCTTTGGGAATTCC
CTGAAGGAGCTCTCTCCGGGGATCTTCGGGCCCATGCCCAACCTGCGGGAGCTTTGGCTCTATGACAACC
ACATCTCTTCTCTACCCGACAATGTCTTCAGCAACCTCCGCCAGTTGCAGGTCCTGATTCTTAGCCGCAA
TCAGATCAGCTTCATCTCCCCGGGTGCCTTCAACGGGCTAACGGAGCTTCGGGAGCTGTCCCTCCACACC
AACGCACTGCAGGACCTGGACGGGAACGTCTTCCGCATGTTGGCCAACCTGCAGAACATCTCCCTGCAGA
ACAACCGCCTCAGACAGCTCCCAGGGAATATCTTCGCCAACGTCAATGGCCTCATGGCCATCCAGCTGCA
GAACAACCAGCTGGAGAACTTGCCCCTCGGCATCTTCGATCACCTGGGGAAACTGTGTGAGCTGCGGCTG
TATGACAATCCCTGGAGGTGTGACTCAGACATCCTTCCGCTCCGCAACTGGCTCCTGCTCAACCAGCCTA
GGTTAGGGACGGACACTGTACCTGTGTGTTTCAGCCCAGCCAATGTCCGAGGCCAGTCCCTCATTATCAT
CAATGTCAACGTTGCTGTTCCAAGCGTCCATGTCCCCGAGGTGCCTAGTTACCCAGAAACACCATGGTAC
CCAGACACACCCAGTTACCCTGACACCACATCCGTCTCTTCTACCACTGAGCTAACCAGCCCTGTGGAAG
ACTACACTGATCTGACTACCATTCAGGTCACTGATGACCGCAGCGTTTGGGGCATGACCCAGGCCCAGAG
CGGGCTGGCCATTGCCGCCATTGTAATTGGCATTGTCGCCCTGGCCTGCTCCCTGGCTGCCTGCGTCGGC
TGTTGCTGCTGCAAGAAGAGGAGCCAAGCTGTCCTGATGCAGATGAAGGCACCCAATGAGTGTTAA

Translation (581 aa):
MPLKHYLLLLVGCQAWGAGLAYHGCPSECTCSRASQVECTGARIVAVPTPLPWNAMSLQILNTHITELNE
SPFLNISALIALRIEKNELSRITPGAFRNLGSLRYLSLANNKLQVLPIGLFQGLDSLESLLLSSNQLLQI
QPAHFSQCSNLKELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLT
DIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNS
LKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHT
NALQDLDGNVFRMLANLQNISLQNNRLRQLPGNIFANVNGLMAIQLQNNQLENLPLGIFDHLGKLCELRL
YDNPWRCDSDILPLRNWLLLNQPRLGTDTVPVCFSPANVRGQSLIIINVNVAVPSVHVPEVPSYPETPWY
PDTPSYPDTTSVSSTTELTSPVEDYTDLTTIQVTDDRSVWGMTQAQSGLAIAAIVIGIVALACSLAACVG
CCCCKKRSQAVLMQMKAPNEC


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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