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Report for CCDS32778.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32778.2 Public Homo sapiens 17 B3GNTL1 24 110 108 CCDS HistoryNCBI Gene:146712Re-query CCDS DB by CCDS ID:32778.2Re-query CCDS DB by GeneID:146712See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 32778.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320865.4 ENSP00000319979.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320865.4Link to Ensembl Protein Viewer:ENSP00000319979.4Re-query CCDS DB by Nucleotide ID:ENST00000320865Re-query CCDS DB by Protein ID:ENSP00000319979
Original member Current member NCBI NM_001009905.3 NP_001009905.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001009905.3Link to Protein Sequence:NP_001009905.2Re-query CCDS DB by Nucleotide ID:NM_001009905Re-query CCDS DB by Protein ID:NP_001009905Link to BLAST:NP_001009905.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009905.2 346 Q67FW5 346 100% 0 0

Chromosomal Locations for CCDS 32778.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 82946903 82946983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82956695 82956769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82957181 82957249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82957359 82957494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82961057 82961181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82965651 82965746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83005115 83005210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83014454 83014519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83035035 83035099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83048471 83048570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83048669 83048785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83051737 83051751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGCAGGCCCACGTGTCTATTATCCTCCCAGTCCACAACGCTGAACCGTGGCTGGACGAATGTTTGAGGT
CTGTTTTGCAACAGGACTTTGAAGGTACCATGGAGCTGTCTGTTTTCAATGATGCCAGTAAGGACAAGTC
TGGGGCTATCATTGAAAAATGGAGAGTGAAGCTGGAAGATTCTGGTGTCCACGTGATCATTGGGGGGCAC
GATTCTCCCTCTCCTAGAGGCGTCGGATACGCTAAAAATCAAGCAGTTGCCCAGAGCTCAGGGTCTTACC
TTTGCTTTTTGGATTCGGATGACGTCATGATGCCCCAGCGGGTGAGGCTGCAACACGAGGCTGCCGTTCA
GCACCCGTCGAGCATCATTGGTTGCAGAGTGAGGAGAGATCCCCCTAACTCCACCGAACGATACACACGT
TGGATCAACCAGCTGACGCCGGAGCAGCTCCTAACCCAGGTTTTCACCTCAAATGGCCCCACGGTGATCA
TGCCCACCTGGTTCTGCTCGCGAGCGTGGTTCTCCCACGTGGGCCCCTTTAACGAGGGAGGTCAGGGCGT
CCCGGAGGACCTGCTGTTCTTCTACGAGCACCTCAGGAAGGGCGGCGGCGTCATCCGCGTGGACCAGAGT
CTCCTGCTGTATCGCCACCACCCACAGGCGGCCACGCACTGCGTCCTCGAGACGACCATCTGGACCCACC
GCGTCCGCTTCCTGGAAGAGCAGGCCCTGCCCCGCTGGGCGGCCTTCACCATCTGGAACGCTGGCAAGCA
GGGGCGCCGGCTGTACCGCAGCTTGACTGCCGGCAGCCAGCGCAAGGTGGTGGCATTCTGTGACGTGGAC
GAGAACAAGATCAGGAAAGGCTTCTATTGCCACGAGGACTCTCAGGAAAGACCCAAGCCCCGAATCCCCA
TCCTGCACTTCCGAGCCGCCCGGCCACCCTTCGTCATCTGCGTGAAGCTGGACCTCACAGGGGGCGCCTT
TGAGGACAACCTGAGGTCACTGCACTTGCAGGAGGGCCAGGACTTCCTTCACTTCAGCTGA

Translation (346 aa):
MQAHVSIILPVHNAEPWLDECLRSVLQQDFEGTMELSVFNDASKDKSGAIIEKWRVKLEDSGVHVIIGGH
DSPSPRGVGYAKNQAVAQSSGSYLCFLDSDDVMMPQRVRLQHEAAVQHPSSIIGCRVRRDPPNSTERYTR
WINQLTPEQLLTQVFTSNGPTVIMPTWFCSRAWFSHVGPFNEGGQGVPEDLLFFYEHLRKGGGVIRVDQS
LLLYRHHPQAATHCVLETTIWTHRVRFLEEQALPRWAAFTIWNAGKQGRRLYRSLTAGSQRKVVAFCDVD
ENKIRKGFYCHEDSQERPKPRIPILHFRAARPPFVICVKLDLTGGAFEDNLRSLHLQEGQDFLHFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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