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Report for CCDS3272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3272.1 Public Homo sapiens 3 LIPH 24 110 108 CCDS HistoryNCBI Gene:200879Re-query CCDS DB by CCDS ID:3272.1Re-query CCDS DB by GeneID:200879See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3272.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296252.9 ENSP00000296252.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296252.9Link to Ensembl Protein Viewer:ENSP00000296252.4Re-query CCDS DB by Nucleotide ID:ENST00000296252Re-query CCDS DB by Protein ID:ENSP00000296252
Original member Current member NCBI NM_139248.3 NP_640341.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139248.3Link to Protein Sequence:NP_640341.1Re-query CCDS DB by Nucleotide ID:NM_139248Re-query CCDS DB by Protein ID:NP_640341Link to BLAST:NP_640341.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_640341.1 451 Q8WWY8 451 100% 0 0

Chromosomal Locations for CCDS 3272.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 185508790 185508877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185511524 185511697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185514410 185514521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185517067 185517162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185519142 185519309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185524071 185524160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185527484 185527585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185533571 185533679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185534765 185535132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185552423 185552471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGTTGAGATTCTACTTATTCATCAGTTTGTTGTGCTTGTCAAGATCAGACGCAGAAGAAACATGTCCTT
CATTCACCAGGCTGAGCTTTCACAGTGCAGTGGTTGGTACGGGACTAAATGTGAGGCTGATGCTCTACAC
AAGGAAAAACCTGACCTGCGCACAAACCATCAACTCCTCAGCTTTTGGGAACTTGAATGTGACCAAGAAA
ACCACCTTCATTGTCCATGGATTCAGGCCAACAGGCTCCCCTCCTGTTTGGATGGATGACTTAGTAAAGG
GTTTGCTCTCTGTTGAAGACATGAACGTAGTTGTTGTTGATTGGAATCGAGGAGCTACAACTTTAATATA
TACCCATGCCTCTAGTAAGACCAGAAAAGTAGCCATGGTCTTGAAGGAATTTATTGACCAGATGTTGGCA
GAAGGAGCTTCTCTTGATGACATTTACATGATCGGAGTAAGTCTAGGAGCCCACATATCTGGGTTTGTTG
GAGAGATGTACGATGGATGGCTGGGGAGAATTACAGGCCTCGACCCTGCAGGCCCTTTATTCAACGGGAA
ACCTCACCAAGACAGATTAGATCCCAGTGATGCGCAGTTTGTTGATGTCATCCATTCCGACACTGATGCA
CTGGGCTACAAGGAGCCATTAGGAAACATAGACTTCTACCCAAATGGAGGATTGGATCAACCTGGCTGCC
CCAAAACAATATTGGGAGGATTTCAGTATTTTAAATGTGACCACCAGAGGTCTGTATACCTGTACCTGTC
TTCCCTGAGAGAGAGCTGCACCATCACTGCGTATCCCTGTGACTCCTACCAGGATTATAGGAATGGCAAG
TGTGTCAGCTGCGGCACGTCACAAAAAGAGTCCTGTCCCCTTCTGGGCTATTATGCTGATAATTGGAAAG
ACCATCTAAGGGGGAAAGATCCTCCAATGACGAAGGCATTCTTTGACACAGCTGAGGAGAGCCCATTCTG
CATGTATCATTACTTTGTGGATATTATAACATGGAACAAGAATGTAAGAAGAGGGGACATTACCATCAAA
TTGAGAGACAAAGCTGGAAACACCACAGAATCCAAAATCAATCATGAACCCACCACATTTCAGAAATATC
ACCAAGTGAGTCTACTTGCAAGATTTAATCAAGATCTGGATAAAGTGGCTGCAATTTCCTTGATGTTCTC
TACAGGATCTCTAATAGGCCCAAGGTACAAGCTCAGGATTCTCCGAATGAAGTTAAGGTCCCTTGCCCAT
CCGGAGAGGCCTCAGCTGTGTCGGTATGATCTTGTCCTGATGGAAAACGTTGAAACAGTCTTCCAACCTA
TTCTTTGCCCAGAGTTGCAGTTGTAA

Translation (451 aa):
MLRFYLFISLLCLSRSDAEETCPSFTRLSFHSAVVGTGLNVRLMLYTRKNLTCAQTINSSAFGNLNVTKK
TTFIVHGFRPTGSPPVWMDDLVKGLLSVEDMNVVVVDWNRGATTLIYTHASSKTRKVAMVLKEFIDQMLA
EGASLDDIYMIGVSLGAHISGFVGEMYDGWLGRITGLDPAGPLFNGKPHQDRLDPSDAQFVDVIHSDTDA
LGYKEPLGNIDFYPNGGLDQPGCPKTILGGFQYFKCDHQRSVYLYLSSLRESCTITAYPCDSYQDYRNGK
CVSCGTSQKESCPLLGYYADNWKDHLRGKDPPMTKAFFDTAEESPFCMYHYFVDIITWNKNVRRGDITIK
LRDKAGNTTESKINHEPTTFQKYHQVSLLARFNQDLDKVAAISLMFSTGSLIGPRYKLRILRMKLRSLAH
PERPQLCRYDLVLMENVETVFQPILCPELQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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