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Report for CCDS32671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32671.1 Public Homo sapiens 17 PLEKHM1 24 110 108 CCDS HistoryNCBI Gene:9842Re-query CCDS DB by CCDS ID:32671.1Re-query CCDS DB by GeneID:9842See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32671.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000430334.8 ENSP00000389913.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000430334.8Link to Ensembl Protein Viewer:ENSP00000389913.3Re-query CCDS DB by Nucleotide ID:ENST00000430334Re-query CCDS DB by Protein ID:ENSP00000389913
Original member Current member EBI ENST00000446609.7 ENSP00000394344.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446609.7Link to Ensembl Protein Viewer:ENSP00000394344.3Re-query CCDS DB by Nucleotide ID:ENST00000446609Re-query CCDS DB by Protein ID:ENSP00000394344
Original member Current member NCBI NM_014798.3 NP_055613.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014798.3Link to Protein Sequence:NP_055613.1Re-query CCDS DB by Nucleotide ID:NM_014798Re-query CCDS DB by Protein ID:NP_055613Link to BLAST:NP_055613.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055613.1 1056 Q9Y4G2 1056 100% 0 0

Chromosomal Locations for CCDS 32671.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 45437858 45437969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45439477 45439634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45440163 45440226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45445470 45445663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45450618 45450763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45453355 45454272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45458169 45458439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45468209 45468593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45475100 45475726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45477900 45478147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45482437 45482484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3171 nt):
ATGCTTTCAGTGGTGGAGAATGGACTGGACCCCCAGGCTGCCATCCCGGTCATCAAGAAGAAGCTGGTGG
GATCCGTGAAGGCCTTGCAGAAGCAGTACGTGTCCCTGGACACGGTGGTCACTAGTGAAGACGGAGATGC
CAACACCATGTGCAGCGCCCTGGAGGCCGTATTTATCCATGGCCTGCACGCCAAGCACATCCGAGCTGAG
GCCGGAGGAAAAAGGAAGAAAAGTGCCCACCAGAAGCCTCTGCCCCAGCCTGTCTTCTGGCCCCTCCTGA
AAGCTGTCACCCACAAACACATCATCTCAGAGTTGGAGCACCTGACGTTTGTCAACACGGATGTGGGCCG
CTGCCGGGCATGGCTGCGGCTGGCCCTGAACGATGGCCTGATGGAGTGCTACCTGAAGCTGCTGCTGCAG
GAGCAGGCCCGCTTGCATGAGTACTACCAGCCCACCGCCCTGCTCCGGGATGCTGAGGAGGGCGAGTTCC
TCCTTAGCTTCCTGCAGGGCCTCACGTCCTTGTCCTTCGAACTCTCCTACAAGTCTGCCATCTTAAATGA
GTGGACGCTCACCCCATTGGCCCTGTCTGGGCTTTGCCCGCTTTCTGAGCTGGACCCTCTCTCTACCTCT
GGTGCAGAACTACAGCGGAAGGAATCTCTGGATTCCATTTCCCATTCTTCAGGCTCTGAAGACATCGAAG
TCCATCACTCGGGCCATAAGATACGGAGGAACCAGAAGCTGACTGCCTCCTCCCTCAGCCTGGACACGGC
CAGTTCATCCCAGCTGTCCTGCAGCCTAAACTCTGATAGCTGCTTACTCCAAGAGAATGGCTCCAAGAGT
CCAGACCATTGCGAGGAGCCCATGTCCTGTGACTCAGACCTGGGCACAGCAAATGCTGAGGACTCAGACC
GGTCTCTGCAAGAGGTATTGTTGGAATTCAGCAAAGCCCAGGTAAACTCTGTGCCAACCAACGGACTGAG
CCAAGAAACAGAGATCCCCACACCACAGGCCTCGCTCTCCCTCCATGGCCTCAACACCAGCACATACCTG
CACTGTGAGGCACCTGCAGAGCCCCTTCCTGCCCAGGCAGCCTCTGGAACTCAAGATGGTGTCCACGTGC
AGGAGCCGCGTCCCCAGGCGCCCAGCCCCCTGGACTTACAGCAGCCTGTAGAGAGCACCTCAGGCCAGCA
GCCTTCTAGTACTGTCAGCGAGACAGCCAGAGAAGTGGGCCAAGGGAATGGCCTGCAGAAGGCCCAGGCT
CATGACGGAGCTGGTCTGAAGCTGGTAGTTTCCTCACCCACCAGTCCGAAAAACAAGAGCTGGATCTCAG
AGGATGACTTCTACCGGCCTTCCCGGGAGCAACCCCTGGAGAGTGCTTCAGACCACCCAATAGCTTCTTA
CAGGGGGACTCCAGGGTCAAGGCCTGGTCTCCACAGGCATTTTTCTCAAGAACCAAGAAAAAACTGCTCC
CTGGGGGCGTTAGACCAAGCGTGTGTACCTTCCCCAGGAAGAAGGCAAGCCCAGGCAGCCCCATCCCAGG
GGCATAAGAGCTTCCGGGTGGTACACCGGAGACAGATGGGACTGTCCAACCCATTCCGGGGTCTCATGAA
GCTGGGCACCGTGGAGCGGCGGGGGGCAATGGGCATCTGGAAGGAGCTCTTCTGCGAGCTCTCCCCGCTG
GAGTTCCGCCTCTACCTGAGCAACGAGGAGCACACCTGTGTGGAGAACTGCTCGCTGCTTCGCTGTGAGT
CTGTGGGGCCAGCCCATAGTGATGGGCGCTTTGAGCTGGTCTTCTCTGGCAAGAAGCTGGCCCTGCGCGC
CTCCTCCCAGGACGAAGCTGAGGACTGGCTGGACCGGGTGCGGGAGGCCCTGCAGAAGGTCCGGCCTCAG
CAGGAGGATGAGTGGGTGAACGTGCAGTACCCAGACCAGCCTGAGGAACCCCCCGAGGCGCCCCAGGGCT
GCCTCTCTCCCTCAGACCTGCTCTCGGAGCCCGCGGCCCTCCAGGGCACACAGTTTGACTGGTCGTCCGC
CCAGGTTCCAGAGCCAGATGCCATCAAGGAGTCCCTGCTGTACTTGTACATGGACAGGACCTGGATGCCC
TATATATTTTCTCTGTCCTTGGAGGCTCTGAAATGTTTCCGCATCAGGAACAATGAGAAGATGCTGAGTG
ACAGCCACGGCGTGGAGACCATCCGGGACATCCTGCCAGACACCAGCCTTGGGGGCCCATCCTTCTTCAA
AATCATCACGGCCAAGGCTGTCCTGAAGCTGCAGGCCGGAAACGCCGAGGAAGCCGCCCTGTGGAGGGAT
CTGGTCCGCAAAGTCCTGGCATCCTACTTGGAGACAGCCGAGGAGGCGGTGACCCTGGGCGGGAGCCTGG
ATGAAAACTGTCAGGAGGTGCTGAAATTTGCCACCCGGGAGAATGGCTTCCTGCTGCAGTACCTGGTGGC
TATCCCCATGGAGAAAGGCCTTGACTCCCAAGGCTGCTTCTGCGCAGGCTGCTCCCGGCAGATCGGCTTC
TCCTTTGTACGACCCAAGCTCTGTGCCTTCTCTGGCCTCTATTACTGTGACATCTGCCACCAAGACGATG
CCTCAGTGATTCCGGCCAGGATCATCCACAACTGGGACCTCACCAAGCGCCCGATCTGCAGGCAGGCCCT
GAAGTTTCTGACACAGATCCGGGCCCAGCCCCTCATCAACCTGCAGATGGTGAACGCGTCTCTGTACGAG
CATGTGGAGCGGATGCACCTCATTGGGAGGAGACGGGAGCAGCTGAAGCTCCTGGGGGATTACCTGGGCC
TGTGCCGGAGTGGCGCCCTGAAGGAGCTCAGCAAGAGGCTCAACCACAGGAATTATCTCTTGGAATCTCC
GCATAGGTTCAGTGTTGCTGACCTCCAACAGATCGCAGACGGGGTGTATGAAGGATTCCTCAAGGCCCTG
ATTGAATTTGCCTCCCAGCATGTCTACCACTGCGACCTGTGCACCCAGCGCGGCTTCATCTGCCAGATCT
GCCAGCACCACGACATCATCTTCCCCTTTGAGTTTGACACCACAGTCAGGTGTGCCGAGTGCAAGACCGT
CTTCCACCAGAGCTGCCAGGCTGTGGTGAAGAAGGGCTGCCCCCGCTGTGCCCGCCGGCGCAAGTACCAG
GAACAGAACATTTTCGCCTGA

Translation (1056 aa):
MLSVVENGLDPQAAIPVIKKKLVGSVKALQKQYVSLDTVVTSEDGDANTMCSALEAVFIHGLHAKHIRAE
AGGKRKKSAHQKPLPQPVFWPLLKAVTHKHIISELEHLTFVNTDVGRCRAWLRLALNDGLMECYLKLLLQ
EQARLHEYYQPTALLRDAEEGEFLLSFLQGLTSLSFELSYKSAILNEWTLTPLALSGLCPLSELDPLSTS
GAELQRKESLDSISHSSGSEDIEVHHSGHKIRRNQKLTASSLSLDTASSSQLSCSLNSDSCLLQENGSKS
PDHCEEPMSCDSDLGTANAEDSDRSLQEVLLEFSKAQVNSVPTNGLSQETEIPTPQASLSLHGLNTSTYL
HCEAPAEPLPAQAASGTQDGVHVQEPRPQAPSPLDLQQPVESTSGQQPSSTVSETAREVGQGNGLQKAQA
HDGAGLKLVVSSPTSPKNKSWISEDDFYRPSREQPLESASDHPIASYRGTPGSRPGLHRHFSQEPRKNCS
LGALDQACVPSPGRRQAQAAPSQGHKSFRVVHRRQMGLSNPFRGLMKLGTVERRGAMGIWKELFCELSPL
EFRLYLSNEEHTCVENCSLLRCESVGPAHSDGRFELVFSGKKLALRASSQDEAEDWLDRVREALQKVRPQ
QEDEWVNVQYPDQPEEPPEAPQGCLSPSDLLSEPAALQGTQFDWSSAQVPEPDAIKESLLYLYMDRTWMP
YIFSLSLEALKCFRIRNNEKMLSDSHGVETIRDILPDTSLGGPSFFKIITAKAVLKLQAGNAEEAALWRD
LVRKVLASYLETAEEAVTLGGSLDENCQEVLKFATRENGFLLQYLVAIPMEKGLDSQGCFCAGCSRQIGF
SFVRPKLCAFSGLYYCDICHQDDASVIPARIIHNWDLTKRPICRQALKFLTQIRAQPLINLQMVNASLYE
HVERMHLIGRRREQLKLLGDYLGLCRSGALKELSKRLNHRNYLLESPHRFSVADLQQIADGVYEGFLKAL
IEFASQHVYHCDLCTQRGFICQICQHHDIIFPFEFDTTVRCAECKTVFHQSCQAVVKKGCPRCARRRKYQ
EQNIFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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