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Report for CCDS3263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3263.1 Public Homo sapiens 3 CLCN2 24 110 108 CCDS HistoryNCBI Gene:1181Re-query CCDS DB by CCDS ID:3263.1Re-query CCDS DB by GeneID:1181See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3263.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265593.9 ENSP00000265593.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265593.9Link to Ensembl Protein Viewer:ENSP00000265593.4Re-query CCDS DB by Nucleotide ID:ENST00000265593Re-query CCDS DB by Protein ID:ENSP00000265593
Original member Current member NCBI NM_004366.6 NP_004357.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004366.6Link to Protein Sequence:NP_004357.3Re-query CCDS DB by Nucleotide ID:NM_004366Re-query CCDS DB by Protein ID:NP_004357Link to BLAST:NP_004357.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004357.3 898 P51788-1 898 100% 0 0

Chromosomal Locations for CCDS 3263.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 184346606 184346800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184346935 184347021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184352013 184352117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184352293 184352331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184352443 184352496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184352737 184352810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184353033 184353147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184353250 184353422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184353662 184353795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184354101 184354314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184354548 184354658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184354904 184354973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184355374 184355529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184355694 184355778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184356993 184357094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184357182 184357266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184357362 184357487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184357620 184357698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184357779 184357856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184357962 184358095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184358182 184358310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184358682 184358813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184358975 184359131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184361417 184361479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2697 nt):
ATGGCGGCCGCGGCGGCGGAGGAAGGGATGGAGCCACGGGCGCTGCAGTACGAGCAGACCCTGATGTATG
GCCGGTACACTCAGGACCTTGGGGCCTTTGCCAAAGAGGAAGCTGCTCGGATTCGCCTGGGAGGGCCTGA
ACCCTGGAAAGGTCCCCCTTCCTCTCGGGCTGCCCCAGAGCTCTTGGAATATGGACGGAGCCGTTGCGCC
CGATGCCGCGTCTGTTCTGTCCGCTGCCACAAGTTCCTAGTATCCAGGGTTGGTGAAGATTGGATCTTCC
TGGTCCTGCTGGGGCTTCTCATGGCATTGGTCAGCTGGGTCATGGACTATGCCATTGCTGCCTGTCTGCA
AGCCCAGCAGTGGATGTCCCGGGGCTTGAACACCAGCATCTTGCTCCAGTACCTGGCCTGGGTCACCTAC
CCTGTTGTCCTCATCACTTTCTCAGCCGGATTCACACAGATCCTGGCCCCTCAGGCTGTCGGCTCTGGCA
TCCCTGAGATGAAGACCATCTTGCGGGGAGTGGTGCTGAAAGAATACCTCACACTCAAGACCTTTATAGC
TAAGGTCATTGGGCTGACCTGCGCCCTAGGCAGCGGGATGCCGCTTGGCAAAGAGGGCCCTTTTGTGCAT
ATCGCAAGCATGTGTGCTGCCCTTCTCAGCAAGTTCCTCTCCCTCTTTGGGGGTATCTATGAGAATGAAT
CCCGGAACACAGAGATGCTGGCTGCCGCCTGTGCCGTGGGGGTGGGCTGCTGCTTCGCGGCACCTATTGG
AGGCGTCCTCTTCAGCATCGAGGTCACCTCCACCTTCTTTGCAGTGCGGAACTACTGGCGGGGCTTCTTC
GCTGCCACCTTCAGTGCCTTCATCTTCCGGGTCTTGGCAGTCTGGAACCGGGATGAAGAGACTATTACAG
CCCTCTTCAAAACCCGATTCCGGCTCGACTTCCCCTTTGACCTGCAGGAGCTGCCAGCCTTTGCTGTCAT
TGGTATTGCTAGTGGCTTCGGTGGAGCCCTCTTTGTCTACCTGAACCGGAAGATTGTCCAGGTGATGCGG
AAGCAGAAAACCATCAATCGCTTCCTCATGAGGAAACGCCTGCTCTTCCCGGCTCTGGTGACCCTGCTCA
TCTCCACGCTGACCTTCCCCCCTGGCTTTGGACAGTTCATGGCTGGACAGCTCTCACAGAAAGAGACGCT
GGTCACCCTGTTTGACAATCGGACGTGGGTCCGCCAGGGCCTGGTGGAGGAGCTAGAACCACCCAGCACC
TCACAGGCCTGGAACCCACCACGTGCCAACGTCTTCCTCACCCTGGTCATCTTCATTCTCATGAAGTTCT
GGATGTCTGCACTGGCCACCACCATCCCAGTTCCCTGTGGGGCCTTCATGCCTGTCTTTGTCATTGGAGC
AGCATTTGGGCGTCTGGTGGGTGAAAGCATGGCTGCCTGGTTCCCAGATGGAATTCATACGGACAGCAGC
ACCTACCGGATTGTGCCTGGGGGCTACGCTGTGGTCGGGGCAGCTGCGCTGGCAGGAGCGGTGACACACA
CAGTGTCCACGGCTGTGATCGTGTTCGAGCTCACAGGCCAGATTGCCCACATCCTGCCTGTCATGATCGC
CGTCATCCTGGCCAACGCTGTCGCCCAGAGTCTGCAGCCCTCCCTCTATGACAGCATCATCCGAATCAAG
AAACTGCCCTACCTGCCTGAGCTCGGCTGGGGCCGCCACCAGCAGTACCGGGTGCGTGTGGAGGACATCA
TGGTGCGGGATGTTCCCCATGTGGCCCTCAGCTGCACCTTCCGGGACCTGCGTTTGGCACTGCACAGGAC
CAAGGGCCGAATGCTGGCCCTAGTGGAGTCCCCTGAGTCCATGATTCTGCTGGGCTCCATCGAGCGTTCA
CAGGTGGTGGCATTGTTGGGGGCCCAGCTGAGCCCAGCCCGCCGGCGGCAGCACATGCAGGAGCGCAGAG
CCACCCAGACCTCTCCACTATCTGATCAGGAGGGTCCCCCTACCCCTGAGGCTTCTGTCTGCTTCCAGGT
GAACACAGAAGACTCAGCCTTCCCAGCAGCCCGGGGGGAGACCCACAAGCCCCTAAAGCCTGCACTCAAG
AGGGGGCCCAGTGTCACCAGGAACCTCGGAGAGAGTCCCACAGGGAGCGCAGAGTCGGCAGGCATCGCCC
TCCGGAGCCTCTTCTGTGGCAGTCCACCCCCTGAGGCTGCTTCGGAGAAGTTGGAATCCTGTGAGAAGCG
CAAGCTGAAGCGTGTCCGAATCTCCCTGGCAAGTGACGCGGACCTGGAAGGCGAGATGAGCCCTGAAGAG
ATTCTGGAGTGGGAGGAGCAGCAACTAGATGAACCTGTCAACTTCAGTGACTGCAAAATTGATCCTGCTC
CCTTCCAGCTGGTGGAGCGGACCTCTTTGCACAAGACTCACACTATCTTCTCACTGCTGGGAGTGGACCA
TGCTTATGTCACCAGTATTGGCAGACTCATTGGAATCGTTACTCTAAAGGAGCTCCGGAAGGCCATCGAG
GGCTCTGTCACAGCACAGGGTGTGAAAGTCCGGCCGCCCCTCGCCAGCTTCCGAGACAGTGCCACCAGCA
GCAGTGACACGGAGACCACTGAGGTGCATGCACTCTGGGGGCCCCACTCCCGTCATGGCCTCCCCCGGGA
GGGCAGCCCTTCCGACAGCGACGACAAATGCCAATGA

Translation (898 aa):
MAAAAAEEGMEPRALQYEQTLMYGRYTQDLGAFAKEEAARIRLGGPEPWKGPPSSRAAPELLEYGRSRCA
RCRVCSVRCHKFLVSRVGEDWIFLVLLGLLMALVSWVMDYAIAACLQAQQWMSRGLNTSILLQYLAWVTY
PVVLITFSAGFTQILAPQAVGSGIPEMKTILRGVVLKEYLTLKTFIAKVIGLTCALGSGMPLGKEGPFVH
IASMCAALLSKFLSLFGGIYENESRNTEMLAAACAVGVGCCFAAPIGGVLFSIEVTSTFFAVRNYWRGFF
AATFSAFIFRVLAVWNRDEETITALFKTRFRLDFPFDLQELPAFAVIGIASGFGGALFVYLNRKIVQVMR
KQKTINRFLMRKRLLFPALVTLLISTLTFPPGFGQFMAGQLSQKETLVTLFDNRTWVRQGLVEELEPPST
SQAWNPPRANVFLTLVIFILMKFWMSALATTIPVPCGAFMPVFVIGAAFGRLVGESMAAWFPDGIHTDSS
TYRIVPGGYAVVGAAALAGAVTHTVSTAVIVFELTGQIAHILPVMIAVILANAVAQSLQPSLYDSIIRIK
KLPYLPELGWGRHQQYRVRVEDIMVRDVPHVALSCTFRDLRLALHRTKGRMLALVESPESMILLGSIERS
QVVALLGAQLSPARRRQHMQERRATQTSPLSDQEGPPTPEASVCFQVNTEDSAFPAARGETHKPLKPALK
RGPSVTRNLGESPTGSAESAGIALRSLFCGSPPPEAASEKLESCEKRKLKRVRISLASDADLEGEMSPEE
ILEWEEQQLDEPVNFSDCKIDPAPFQLVERTSLHKTHTIFSLLGVDHAYVTSIGRLIGIVTLKELRKAIE
GSVTAQGVKVRPPLASFRDSATSSSDTETTEVHALWGPHSRHGLPREGSPSDSDDKCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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