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Report for CCDS32525.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32525.1 Public Homo sapiens 17 TSR1 24 110 108 CCDS HistoryNCBI Gene:55720Re-query CCDS DB by CCDS ID:32525.1Re-query CCDS DB by GeneID:55720See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32525.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301364.10 ENSP00000301364.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301364.10Link to Ensembl Protein Viewer:ENSP00000301364.4Re-query CCDS DB by Nucleotide ID:ENST00000301364Re-query CCDS DB by Protein ID:ENSP00000301364
Original member Current member NCBI NM_018128.5 NP_060598.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018128.5Link to Protein Sequence:NP_060598.3Re-query CCDS DB by Nucleotide ID:NM_018128Re-query CCDS DB by Protein ID:NP_060598Link to BLAST:NP_060598.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060598.3 804 Q2NL82 804 100% 0 0

Chromosomal Locations for CCDS 32525.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 2324196 2324374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2324504 2324578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2324689 2324829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2325304 2325420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2329343 2329475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2330515 2330625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2330947 2331109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2332169 2332359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2332961 2333124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2333557 2333716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2334472 2334896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2335260 2335394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2335511 2335730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2336037 2336140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2336331 2336427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2415 nt):
ATGGCGGCCCACCGCCCCGGCCCGCTCAAGCAGCAGAATAAAGCTCATAAAGGCGGACGGCATCGGGGTC
GGGGATCTGCACAGCGGGACGGCAAGGGCCGTCTGGCACTGAAAACCCTAAGCAAGAAGGTGAGAAAAGA
ACTCAGCAGAGTCGACCAGAGGCATCGCGCCAGCCAGCTCCGAAAGCAGAAGAAGGAGGCGGTTCTGGCA
GAGAAGAGACAGCTGGGTGGCAAGGATGGCCCTCCTCATCAGGTACTGGTGGTGCCCCTGCACAGCAGAA
TTTCCCTGCCAGAGGCCATGCAGCTGCTTCAAGATAGGGACACTGGAACAGTACACTTGAATGAATTGGG
AAACACCCAGAACTTTATGCTGCTGTGCCCCCGCTTGAAACATCGGTGGTTTTTCACCTCAGCAAGGCCA
GGGGATCTGCACGTTGTGTTAGACATGGCTAAAGTAGCTGATACCATCCTGTTCCTCCTTGATCCACTAG
AAGGCTGGGACAGCACCGGTGATTACTGTCTTTCCTGCCTCTTTGCTCAGGGCCTTCCGACCTATACACT
AGCTGTCCAGGGGATTTCTGGCCTCCCACTGAAGAAACAAATAGATACCAGGAAGAAGCTAAGTAAAGCA
GTGGAGAAGCGCTTTCCGCATGACAAACTCCTCTTGTTAGACACTCAACAGGAGGCAGGGATGCTGCTTA
GGCAGTTGGCTAACCAGAAGCAACAGCATCTTGCTTTTCGAGATCGGCGGGCCTACCTATTTGCCCATGC
TGTTGATTTTGTTCCTAGTGAAGAGAATAACTTGGTGGGCACCTTGAAAATTTCAGGCTATGTTCGAGGG
CAGACTCTGAATGTCAATAGGTTGCTGCATATCGTTGGATATGGTGATTTCCAGATGAAACAGATAGATG
CCCCCGGAGACCCTTTCCCTTTAAATCCTAGAGGAATTAAACCCCAAAAGGACCCAGACATGGCAATGGA
GATTTGTGCTACGGATGCTGTAGATGATATGGAAGAAGGTCTTAAAGTCCTAATGAAGGCAGACCCTGGT
AGACAGGAATCCTTGCAAGCAGAGGTTATCCCAGATCCAATGGAGGGAGAGCAAACCTGGCCCACTGAGG
AGGAGCTGAGCGAGGCAAAGGATTTCTTGAAGGAAAGTTCTAAGGTGGTAAAGAAGGTCCCCAAAGGAAC
ATCCAGTTACCAAGCTGAATGGATTTTGGATGGTGGCAGCCAAAGTGGTGGGGAAGGAGATGAATATGAA
TATGATGATATGGAACATGAGGATTTTATGGAGGAGGAATCTCAGGATGAGAGTAGTGAAGAAGAGGAAG
AATATGAAACTATGACTATTGGGGAGTCTGTGCATGATGATCTGTATGATAAGAAAGTAGATGAAGAAGC
TGAGGCAAAAATGTTGGAGAAATATAAACAAGAAAGACTGGAAGAGATGTTTCCAGATGAAGTGGACACG
CCCCGTGATGTGGCTGCTCGAATTCGATTTCAGAAATACAGAGGCCTTAAGAGCTTCCGGACATCTCCAT
GGGATCCTAAGGAAAACCTTCCTCAAGATTATGCTCGAATATTTCAGTTTCAGAACTTTACTAACACTAG
GAAAAGCATCTTTAAAGAGGTTGAAGAAAAAGAGGTTGAAGGAGCTGAGGTTGGCTGGTATGTCACACTT
CATGTCTCTGAAGTCCCCGTCTCAGTGGTCGAGTGCTTCAGGCAAGGAACACCCTTGATTGCATTTTCTT
TACTACCTCATGAACAGAAGATGTCAGTATTGAATATGGTGGTGAGGCGTGACCCTGGCAACACTGAACC
TGTGAAAGCCAAGGAAGAGCTCATATTTCACTGTGGATTCAGGCGCTTCCGAGCCTCACCTTTATTCTCT
CAGCACACTGCAGCGGACAAACATAAATTGCAGAGATTCCTGACTGCTGACATGGCCCTGGTGGCGACAG
TCTATGCGCCAATCACTTTTCCTCCTGCATCTGTGCTGCTTTTCAAGCAAAAAAGCAATGGAATGCACAG
CCTCATTGCTACAGGCCATCTTATGTCAGTAGATCCAGACAGAATGGTCATCAAGAGAGTTGTTCTGAGT
GGTCATCCTTTCAAAATTTTTACTAAGATGGCAGTAGTACGTTACATGTTCTTCAACAGAGAGGATGTGC
TGTGGTTTAAACCAGTGGAACTGAGAACGAAGTGGGGCCGGAGAGGACATATCAAGGAACCTTTAGGTAC
CCATGGCCACATGAAATGCAGCTTTGATGGGAAGCTAAAATCTCAAGACACAGTACTGATGAACCTGTAT
AAACGAGTCTTCCCCAAATGGACTTATGATCCATATGTACCAGAACCAGTACCCTGGCTGAAAAGTGAGA
TTTCTTCAACAGTGCCTCAAGGGGGCATGGAGTAA

Translation (804 aa):
MAAHRPGPLKQQNKAHKGGRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQLRKQKKEAVLA
EKRQLGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNELGNTQNFMLLCPRLKHRWFFTSARP
GDLHVVLDMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQGLPTYTLAVQGISGLPLKKQIDTRKKLSKA
VEKRFPHDKLLLLDTQQEAGMLLRQLANQKQQHLAFRDRRAYLFAHAVDFVPSEENNLVGTLKISGYVRG
QTLNVNRLLHIVGYGDFQMKQIDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPG
RQESLQAEVIPDPMEGEQTWPTEEELSEAKDFLKESSKVVKKVPKGTSSYQAEWILDGGSQSGGEGDEYE
YDDMEHEDFMEEESQDESSEEEEEYETMTIGESVHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDT
PRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEKEVEGAEVGWYVTL
HVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASPLFS
QHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMHSLIATGHLMSVDPDRMVIKRVVLS
GHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGRRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLY
KRVFPKWTYDPYVPEPVPWLKSEISSTVPQGGME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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