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Report for CCDS3246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3246.1 Public Homo sapiens 3 KLHL24 24 110 108 CCDS HistoryNCBI Gene:54800Re-query CCDS DB by CCDS ID:3246.1Re-query CCDS DB by GeneID:54800See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3246.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000242810.11 ENSP00000242810.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000242810.11Link to Ensembl Protein Viewer:ENSP00000242810.6Re-query CCDS DB by Nucleotide ID:ENST00000242810Re-query CCDS DB by Protein ID:ENSP00000242810
Original member Current member EBI ENST00000454652.6 ENSP00000395012.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454652.6Link to Ensembl Protein Viewer:ENSP00000395012.1Re-query CCDS DB by Nucleotide ID:ENST00000454652Re-query CCDS DB by Protein ID:ENSP00000395012
Original member Current member NCBI NM_001349419.1 NP_001336348.1 Accepted alive Link to Nucleotide Sequence:NM_001349419.1Link to Protein Sequence:NP_001336348.1Re-query CCDS DB by Nucleotide ID:NM_001349419Re-query CCDS DB by Protein ID:NP_001336348Link to BLAST:NP_001336348.1
Original member Current member NCBI NM_001349420.1 NP_001336349.1 Accepted alive Link to Nucleotide Sequence:NM_001349420.1Link to Protein Sequence:NP_001336349.1Re-query CCDS DB by Nucleotide ID:NM_001349420Re-query CCDS DB by Protein ID:NP_001336349Link to BLAST:NP_001336349.1
Original member Current member NCBI NM_001349421.1 NP_001336350.1 Accepted alive Link to Nucleotide Sequence:NM_001349421.1Link to Protein Sequence:NP_001336350.1Re-query CCDS DB by Nucleotide ID:NM_001349421Re-query CCDS DB by Protein ID:NP_001336350Link to BLAST:NP_001336350.1
Original member Current member NCBI NM_001349422.1 NP_001336351.1 Accepted alive Link to Nucleotide Sequence:NM_001349422.1Link to Protein Sequence:NP_001336351.1Re-query CCDS DB by Nucleotide ID:NM_001349422Re-query CCDS DB by Protein ID:NP_001336351Link to BLAST:NP_001336351.1
Original member Current member NCBI NM_001349423.1 NP_001336352.1 Accepted alive Link to Nucleotide Sequence:NM_001349423.1Link to Protein Sequence:NP_001336352.1Re-query CCDS DB by Nucleotide ID:NM_001349423Re-query CCDS DB by Protein ID:NP_001336352Link to BLAST:NP_001336352.1
Original member Current member NCBI NM_001349424.1 NP_001336353.1 Accepted alive Link to Nucleotide Sequence:NM_001349424.1Link to Protein Sequence:NP_001336353.1Re-query CCDS DB by Nucleotide ID:NM_001349424Re-query CCDS DB by Protein ID:NP_001336353Link to BLAST:NP_001336353.1
Original member Current member NCBI NM_001349425.1 NP_001336354.1 Accepted alive Link to Nucleotide Sequence:NM_001349425.1Link to Protein Sequence:NP_001336354.1Re-query CCDS DB by Nucleotide ID:NM_001349425Re-query CCDS DB by Protein ID:NP_001336354Link to BLAST:NP_001336354.1
Original member Current member NCBI NM_001349426.1 NP_001336355.1 Accepted alive Link to Nucleotide Sequence:NM_001349426.1Link to Protein Sequence:NP_001336355.1Re-query CCDS DB by Nucleotide ID:NM_001349426Re-query CCDS DB by Protein ID:NP_001336355Link to BLAST:NP_001336355.1
Original member Current member NCBI NM_017644.3 NP_060114.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017644.3Link to Protein Sequence:NP_060114.2Re-query CCDS DB by Nucleotide ID:NM_017644Re-query CCDS DB by Protein ID:NP_060114Link to BLAST:NP_060114.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001336348.1 600 Q6TFL4-1 600 100% 0 0
NP_001336349.1 600 Q6TFL4-1 600 100% 0 0
NP_001336350.1 600 Q6TFL4-1 600 100% 0 0
NP_001336351.1 600 Q6TFL4-1 600 100% 0 0
NP_001336352.1 600 Q6TFL4-1 600 100% 0 0
NP_001336353.1 600 Q6TFL4-1 600 100% 0 0
NP_001336354.1 600 Q6TFL4-1 600 100% 0 0
NP_001336355.1 600 Q6TFL4-1 600 100% 0 0
NP_060114.2 600 Q6TFL4-1 600 100% 0 0

Chromosomal Locations for CCDS 3246.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 183650357 183651276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 183663458 183663642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 183664921 183665039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 183671034 183671222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 183672296 183672484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 183679086 183679286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGGTACTAATATTGGGACGCAGACTAAACAGAGAGGATCTTGGGGTGCGTGATTCCCCAGCAACTAAGC
GAAAAGTTTTTGAAATGGACCCCAAATCTCTGACAGGTCATGAGTTTTTTGACTTCTCTTCAGGATCATC
CCATGCCGAAAACATACTCCAGATATTTAATGAATTTCGTGATAGCCGCTTATTCACAGATGTTATCATT
TGTGTGGAAGGAAAAGAATTTCCTTGCCATAGAGCTGTGCTCTCAGCCTGTAGCAGCTACTTCAGAGCTA
TGTTTTGTAATGACCACAGGGAAAGCCGAGAAATGTTGGTTGAGATCAATGGTATTTTAGCTGAAGCTAT
GGAATGTTTTTTGCAGTATGTTTATACTGGAAAGGTGAAGATCACTACAGAGAATGTACAGTATCTCTTT
GAGACATCAAGCCTCTTTCAGATTAGTGTTCTCCGTGATGCATGTGCCAAGTTCTTGGAGGAGCAACTTG
ATCCTTGTAATTGCTTAGGAATCCAGCGCTTTGCTGATACCCATTCACTCAAAACACTCTTCACAAAATG
CAAAAATTTTGCGTTACAGACTTTTGAGGATGTATCCCAGCACGAAGAATTTCTTGAGCTTGACAAAGAT
GAACTTATTGATTATATTTGTAGTGATGAACTTGTTATTGGTAAAGAGGAGATGGTTTTTGAAGCCGTCA
TGCGTTGGGTCTATCGTGCCGTTGATCTGAGAAGACCACTGTTACACGAGCTCCTGACACATGTGAGACT
CCCTCTGTTGCATCCCAACTACTTTGTTCAAACAGTTGAAGTGGACCAATTGATCCAGAATTCTCCTGAG
TGTTATCAGTTGTTGCATGAAGCAAGACGGTACCACATACTTGGGAATGAAATGATGTCCCCAAGGACTA
GGCCACGCAGGTCCACTGGCTATTCTGAGGTGATAGTTGTCGTTGGAGGATGTGAGCGAGTTGGAGGATT
TAATCTTCCATACACTGAGTGCTACGATCCTGTAACAGGAGAATGGAAGTCTTTGGCTAAGCTTCCAGAA
TTTACCAAATCAGAGTATGCAGTCTGTGCTCTAAGGAATGACATTCTTGTTTCAGGTGGAAGAATCAACA
GCCGTGATGTCTGGATTTATAACTCACAGTTAAATATTTGGATCAGAGTTGCCTCTCTCAATAAAGGCAG
ATGGCGTCACAAAATGGCTGTCCTCCTTGGTAAAGTATATGTTGTCGGTGGCTATGATGGGCAAAACAGA
CTTAGCAGCGTAGAATGTTATGATTCCTTTTCAAATCGATGGACTGAAGTTGCTCCCCTTAAGGAAGCCG
TGAGTTCTCCTGCAGTGACTAGCTGTGTAGGCAAACTGTTTGTGATTGGTGGAGGACCTGATGATAATAC
TTGTTCTGATAAGGTTCAATCTTATGATCCAGAAACCAATTCTTGGCTACTTCGTGCAGCTATCCCAATT
GCCAAAAGGTGTATAACAGCTGTATCCCTAAACAACCTGATCTATGTTGCCGGTGGACTGACCAAGGCAA
TATACTGTTACGATCCAGTTGAAGATTACTGGATGCACGTACAGAATACATTCAGCCGTCAGGAAAACTG
TGGTATGTCTGTGTGTAATGGTAAAATATATATCCTGGGCGGAAGACGGGAAAATGGAGAAGCCACAGAC
ACTATTCTCTGTTATGATCCTGCAACAAGTATCATCACAGGGGTAGCTGCAATGCCCAGGCCAGTGTCCT
ATCATGGCTGTGTGACTATTCATAGATACAATGAGAAATGCTTTAAACTCTGA

Translation (600 aa):
MVLILGRRLNREDLGVRDSPATKRKVFEMDPKSLTGHEFFDFSSGSSHAENILQIFNEFRDSRLFTDVII
CVEGKEFPCHRAVLSACSSYFRAMFCNDHRESREMLVEINGILAEAMECFLQYVYTGKVKITTENVQYLF
ETSSLFQISVLRDACAKFLEEQLDPCNCLGIQRFADTHSLKTLFTKCKNFALQTFEDVSQHEEFLELDKD
ELIDYICSDELVIGKEEMVFEAVMRWVYRAVDLRRPLLHELLTHVRLPLLHPNYFVQTVEVDQLIQNSPE
CYQLLHEARRYHILGNEMMSPRTRPRRSTGYSEVIVVVGGCERVGGFNLPYTECYDPVTGEWKSLAKLPE
FTKSEYAVCALRNDILVSGGRINSRDVWIYNSQLNIWIRVASLNKGRWRHKMAVLLGKVYVVGGYDGQNR
LSSVECYDSFSNRWTEVAPLKEAVSSPAVTSCVGKLFVIGGGPDDNTCSDKVQSYDPETNSWLLRAAIPI
AKRCITAVSLNNLIYVAGGLTKAIYCYDPVEDYWMHVQNTFSRQENCGMSVCNGKIYILGGRRENGEATD
TILCYDPATSIITGVAAMPRPVSYHGCVTIHRYNEKCFKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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