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Report for CCDS32301.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32301.2 Public Homo sapiens 15 TBC1D2B 24 110 108 CCDS HistoryNCBI Gene:23102Re-query CCDS DB by CCDS ID:32301.2Re-query CCDS DB by GeneID:23102See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 32301.1
The coding region has been updated to extend the N-terminus to one that is more supported by available homology data. The update adds a pleckstrin homology (PH) domain to the protein.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 32301.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409931.7 ENSP00000387165.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409931.7Link to Ensembl Protein Viewer:ENSP00000387165.3Re-query CCDS DB by Nucleotide ID:ENST00000409931Re-query CCDS DB by Protein ID:ENSP00000387165
Original member Current member NCBI NM_015079.6 NP_055894.6 Accepted alive Link to Nucleotide Sequence:NM_015079.6Link to Protein Sequence:NP_055894.6Re-query CCDS DB by Nucleotide ID:NM_015079Re-query CCDS DB by Protein ID:NP_055894Link to BLAST:NP_055894.6

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055894.6 914 Q9UPU7-2 914 100% 0 0

Chromosomal Locations for CCDS 32301.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77998255 77998303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78001619 78001740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78003305 78003490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78008997 78009114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78012823 78013317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78016546 78016739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78017847 78017957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78024156 78024539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78025259 78025497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78030007 78030170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78044900 78045068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78054034 78054187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78077293 78077652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2745 nt):
ATGCCGGGGGCCGGAGCCCGGGCGGAGGAGGGCGGCGGCGGCGGCGAGGGCGCGGCGCAGGGGGCGGCCG
CGGAGCCCGGGGCGGGTCCGGCGCGGGAGCCAGCGCGGCTGTGTGGCTATCTGCAGAAGCTGTCGGGCAA
GGGCCCCCTGCGTGGCTACCGCAGCCGCTGGTTCGTGTTCGACGCGCGCCGCTGCTACCTTTACTATTTC
AAGAGTCCGCAGGACGCGCTGCCCCTCGGCCACTTGGACATCGCGGACGCCTGCTTCAGCTACCAGGGCC
CCGACGAGGCGGCGGAGCCGGGCACGGAGCCGCCCGCGCACTTCCAGGTGCACAGCGCGGGAGCCGTCAC
GGTGCTCAAGGCTCCCAATCGTCAACTCATGACTTACTGGTTACAGGAGCTTCAGCAGAAGAGATGGGAA
TATTGTAACAGTCTTGACATGGTCAAGTGGGACAGCAGGACCTCTCCAACTCCCGGGGATTTTCCTAAGG
GTCTTGTAGCCAGAGATAACACTGATTTAATTTACCCACACCCAAATGCTTCTGCAGAAAAAGCCAGAAA
TGTCCTAGCTGTGGAGACTGTGCCTGGAGAGCTGGTGGGAGAACAAGCTGCAAATCAGCCCGCCCCAGGG
CATCCAAATTCCATTAATTTTTACTCTTTGAAACAGTGGGGCAATGAGCTCAAGAATTCGATGTCTTCTT
TCCGTCCTGGGAGAGGACATAATGATAGTCGGAGGACTGTGTTTTATACCAATGAAGAGTGGGAACTTTT
AGACCCAACCCCTAAGGACCTAGAGGAGTCCATAGTACAGGAAGAAAAGAAGAAGCTGACCCCTGAAGGA
AACAAAGGAGTAACTGGCTCAGGATTCCCCTTTGATTTTGGACGTAACCCCTACAAAGGAAAGCGCCCTT
TGAAAGACATAATTGGGTCGTACAAAAATCGTCACAGCAGTGGTGACCCTTCAAGTGAAGGCACATCAGG
CAGTGGCAGCGTCAGCATCAGGAAGCCGGCCTCCGAAATGCAACTGCAGGTCCAGAGCCAGCAGGAAGAG
CTGGAACAGTTAAAGAAAGACCTGTCCAGTCAGAAGGAGCTTGTTCGACTGCTCCAGCAGACAGTCCGGT
CATCCCAGTATGACAAGTATTTCACAAGCAGCCGGCTCTGTGAGGGGGTCCCAAAGGACACGCTCGAGCT
TCTGCACCAAAAGGATGATCAGATTCTGGGCCTTACCAGCCAGCTGGAGAGGTTCAGCTTGGAGAAGGAG
AGTCTTCAGCAGGAAGTAAGGACGCTGAAGAGCAAAGTGGGCGAGCTCAACGAGCAGCTGGGAATGCTCA
TGGAGACCATCCAAGCCAAGGACGAGGTCATCATCAAGCTCAGCGAGGGCGAGGGCAACGGGCCTCCTCC
CACCGTGGCGCCCAGCTCCCCTTCGGTTGTGCCTGTTGCCAGGGACCAGCTGGAACTGGACAGGCTGAAA
GATAATCTACAGGGGTACAAAACCCAAAACAAATTTCTAAATAAGGAGATTTTGGAACTCTCAGCTCTAC
GAAGAAATGCAGAAAGGAGAGAGAGGGATCTGATGGCAAAGTATTCTAGCCTGGAAGCCAAGCTCTGCCA
GATAGAAAGTAAATACCTGATATTGCTCCAAGAAATGAAGACACCAGTGTGCTCAGAAGACCAGGGGCCC
ACCCGGGAGGTCATAGCCCAGTTGCTGGAGGATGCTCTGCAGGTTGAGAGCCAAGAGCAGCCGGAGCAAG
CATTTGTTAAACCTCATCTTGTCAGTGAATATGATATTTATGGGTTCAGGACTGTACCTGAGGATGATGA
GGAAGAGAAATTGGTTGCCAAGGTCCGCGCGTTGGATCTGAAGACTCTCTACCTCACAGAAAACCAGGAA
GTCTCCACTGGGGTCAAGTGGGAAAACTATTTTGCAAGTACAGTGAACAGGGAGATGATGTGCTCTCCAG
AGTTAAAAAACCTCATCCGTGCGGGCATTCCCCACGAGCACCGTTCCAAGGTGTGGAAGTGGTGTGTGGA
CCGTCACACCAGGAAGTTCAAGGACAACACTGAGCCTGGCCACTTCCAGACCTTGCTGCAGAAGGCGCTG
GAGAAACAGAACCCAGCCTCCAAGCAGATTGAGCTGGACTTGCTGCGAACTCTGCCCAACAACAAACATT
ACTCCTGCCCCACCTCAGAAGGCATACAGAAGTTACGCAATGTCCTCCTCGCCTTCTCCTGGCGGAATCC
AGATATCGGCTACTGTCAAGGCCTAAACAGGTTGGTGGCAGTGGCCCTCCTGTACCTGGAACAAGAAGAT
GCTTTCTGGTGTCTCGTTACCATAGTGGAAGTTTTCATGCCTCGAGACTATTATACAAAGACTCTTTTAG
GATCCCAGGTGGACCAGCGGGTGTTCAGAGACCTTATGAGTGAGAAGCTGCCTCGGTTGCATGGCCACTT
TGAACAGTACAAAGTCGACTACACTCTCATCACTTTCAACTGGTTTCTGGTGGTATTTGTGGATAGTGTC
GTTAGTGACATCCTCTTTAAAATATGGGACTCTTTCCTTTATGAAGGACCAAAGGTTATTTTCCGTTTTG
CTCTGGCACTTTTTAAGTACAAGGAAGAGGAGATTTTGAAATTGCAAGATTCGATGTCTATATTTAAGTA
TCTCCGCTACTTCACTCGCACTATCCTTGATGCTAGATCCGGAACCGACGCGCCTACCACTTGGAGAAAG
TCCGGCTGGAGCTGA

Translation (914 aa):
MPGAGARAEEGGGGGEGAAQGAAAEPGAGPAREPARLCGYLQKLSGKGPLRGYRSRWFVFDARRCYLYYF
KSPQDALPLGHLDIADACFSYQGPDEAAEPGTEPPAHFQVHSAGAVTVLKAPNRQLMTYWLQELQQKRWE
YCNSLDMVKWDSRTSPTPGDFPKGLVARDNTDLIYPHPNASAEKARNVLAVETVPGELVGEQAANQPAPG
HPNSINFYSLKQWGNELKNSMSSFRPGRGHNDSRRTVFYTNEEWELLDPTPKDLEESIVQEEKKKLTPEG
NKGVTGSGFPFDFGRNPYKGKRPLKDIIGSYKNRHSSGDPSSEGTSGSGSVSIRKPASEMQLQVQSQQEE
LEQLKKDLSSQKELVRLLQQTVRSSQYDKYFTSSRLCEGVPKDTLELLHQKDDQILGLTSQLERFSLEKE
SLQQEVRTLKSKVGELNEQLGMLMETIQAKDEVIIKLSEGEGNGPPPTVAPSSPSVVPVARDQLELDRLK
DNLQGYKTQNKFLNKEILELSALRRNAERRERDLMAKYSSLEAKLCQIESKYLILLQEMKTPVCSEDQGP
TREVIAQLLEDALQVESQEQPEQAFVKPHLVSEYDIYGFRTVPEDDEEEKLVAKVRALDLKTLYLTENQE
VSTGVKWENYFASTVNREMMCSPELKNLIRAGIPHEHRSKVWKWCVDRHTRKFKDNTEPGHFQTLLQKAL
EKQNPASKQIELDLLRTLPNNKHYSCPTSEGIQKLRNVLLAFSWRNPDIGYCQGLNRLVAVALLYLEQED
AFWCLVTIVEVFMPRDYYTKTLLGSQVDQRVFRDLMSEKLPRLHGHFEQYKVDYTLITFNWFLVVFVDSV
VSDILFKIWDSFLYEGPKVIFRFALALFKYKEEEILKLQDSMSIFKYLRYFTRTILDARSGTDAPTTWRK
SGWS


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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