NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32132.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32132.1 Public Homo sapiens 14 SPATA7 24 110 108 CCDS HistoryNCBI Gene:55812Re-query CCDS DB by CCDS ID:32132.1Re-query CCDS DB by GeneID:55812See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32132.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356583.9 ENSP00000348991.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356583.9Link to Ensembl Protein Viewer:ENSP00000348991.5Re-query CCDS DB by Nucleotide ID:ENST00000356583Re-query CCDS DB by Protein ID:ENSP00000348991
Original member Current member EBI ENST00000556553.5 ENSP00000451128.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000556553.5Link to Ensembl Protein Viewer:ENSP00000451128.1Re-query CCDS DB by Nucleotide ID:ENST00000556553Re-query CCDS DB by Protein ID:ENSP00000451128
Original member Current member NCBI NM_001040428.4 NP_001035518.1 Accepted alive Link to Nucleotide Sequence:NM_001040428.4Link to Protein Sequence:NP_001035518.1Re-query CCDS DB by Nucleotide ID:NM_001040428Re-query CCDS DB by Protein ID:NP_001035518Link to BLAST:NP_001035518.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035518.1 567 Q9P0W8-2 567 100% 0 0

Chromosomal Locations for CCDS 32132.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 88385819 88385837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88391381 88391455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88396156 88396203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88416711 88416844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88426232 88426704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88427630 88427696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88429348 88429463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88431172 88431225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88433135 88433212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88437543 88437597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88437838 88438422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGGATGGCAGCCGGAGAGTCAGAGCAACCTCTGTCCTTCCCAGATATGGTCCACCGTGCCTATTTAAAG
GACACTTGAGCACCAAAAGTAATGCTGCAGTAGACTGCTCGGTTCCAGTAAGCGTGAGTACCAGCATAAA
GTATGCAGACCAACAACGAAGAGAGAAACTCAAAAAGGAATTAGCACAATGTGAAAAAGAGTTCAAATTA
ACTAAAACTGCAATGCGAGCCAATTATAAAAATAATTCCAAGTCACTTTTTAATACCTTACAAAAGCCCT
CAGGCGAACCGCAAATTGAGGATGACATGTTAAAAGAAGAAATGAATGGATTTTCATCCTTTGCAAGGTC
ACTAGTACCCTCTTCAGAGAGACTACACCTAAGTCTACATAAATCCAGTAAAGTCATCACAAATGGTCCT
GAGAAGAACTCCAGTTCCTCCCCGTCCAGTGTGGATTATGCAGCCTCCGGGCCCCGGAAACTGAGCTCTG
GAGCCCTGTATGGCAGAAGGCCCAGAAGCACATTCCCAAATTCCCACCGGTTTCAGTTAGTCATTTCGAA
AGCACCCAGTGGGGATCTTTTGGATAAACATTCTGAACTCTTTTCTAACAAACAATTGCCATTCACTCCT
CGCACTTTAAAAACAGAAGCAAAATCTTTCCTGTCACAGTATCGCTATTATACACCTGCCAAAAGAAAAA
AGGATTTTACAGATCAACGGATAGAAGCTGAAACCCAGACTGAATTAAGCTTTAAATCTGAGTTGGGGAC
AGCTGAGACTAAAAACATGACAGATTCAGAAATGAACATAAAGCAGGCATCTAATTGTGTGACATATGAT
GCCAAAGAAAAAATAGCTCCTTTACCTTTAGAAGGGCATGACTCAACATGGGATGAGATTAAGGATGATG
CTCTTCAGCATTCCTCACCAAGGGCAATGTGTCAGTATTCCCTGAAGCCCCCTTCAACTCGTAAAATCTA
CTCTGATGAAGAAGAACTGTTGTATCTGAGTTTCATTGAAGATGTAACAGATGAAATTTTGAAACTTGGT
TTATTTTCAAACAGGTTTTTAGAACGACTGTTCGAGCGACATATAAAACAAAATAAACATTTGGAGGAGG
AAAAAATGCGCCACCTGCTGCATGTCCTGAAAGTAGACTTAGGCTGCACATCGGAGGAAAACTCGGTAAA
GCAAAATGATGTTGATATGTTGAATGTATTTGATTTTGAAAAGGCTGGGAATTCAGAACCAAATGAATTA
AAAAATGAAAGTGAAGTAACAATTCAGCAGGAACGTCAACAATACCAAAAGGCTTTGGATATGTTATTGT
CGGCACCAAAGGATGAGAACGAGATATTCCCTTCACCAACTGAATTTTTCATGCCTATTTATAAATCAAA
GCATTCAGAAGGGGTTATAATTCAACAGGTGAATGATGAAACAAATCTTGAAACTTCAACTTTGGATGAA
AATCATCCAAGTATTTCAGACAGTTTAACAGATCGGGAAACTTCTGTGAATGTCATTGAAGGTGATAGTG
ACCCTGAAAAGGTTGAGATTTCAAATGGATTATGTGGTCTTAACACATCACCCTCCCAATCTGTTCAGTT
CTCCAGTGTCAAAGGCGACAATAATCATGACATGGAGTTATCAACTCTTAAAATCATGGAAATGAGCATT
GAGGACTGCCCTTTGGATGTTTAA

Translation (567 aa):
MDGSRRVRATSVLPRYGPPCLFKGHLSTKSNAAVDCSVPVSVSTSIKYADQQRREKLKKELAQCEKEFKL
TKTAMRANYKNNSKSLFNTLQKPSGEPQIEDDMLKEEMNGFSSFARSLVPSSERLHLSLHKSSKVITNGP
EKNSSSSPSSVDYAASGPRKLSSGALYGRRPRSTFPNSHRFQLVISKAPSGDLLDKHSELFSNKQLPFTP
RTLKTEAKSFLSQYRYYTPAKRKKDFTDQRIEAETQTELSFKSELGTAETKNMTDSEMNIKQASNCVTYD
AKEKIAPLPLEGHDSTWDEIKDDALQHSSPRAMCQYSLKPPSTRKIYSDEEELLYLSFIEDVTDEILKLG
LFSNRFLERLFERHIKQNKHLEEEKMRHLLHVLKVDLGCTSEENSVKQNDVDMLNVFDFEKAGNSEPNEL
KNESEVTIQQERQQYQKALDMLLSAPKDENEIFPSPTEFFMPIYKSKHSEGVIIQQVNDETNLETSTLDE
NHPSISDSLTDRETSVNVIEGDSDPEKVEISNGLCGLNTSPSQSVQFSSVKGDNNHDMELSTLKIMEMSI
EDCPLDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH