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Report for CCDS32041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32041.1 Public Homo sapiens 14 ARHGEF40 24 110 108 CCDS HistoryNCBI Gene:55701Re-query CCDS DB by CCDS ID:32041.1Re-query CCDS DB by GeneID:55701See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32041.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298694.9 ENSP00000298694.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298694.9Link to Ensembl Protein Viewer:ENSP00000298694.4Re-query CCDS DB by Nucleotide ID:ENST00000298694Re-query CCDS DB by Protein ID:ENSP00000298694
Original member Current member NCBI NM_018071.5 NP_060541.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018071.5Link to Protein Sequence:NP_060541.3Re-query CCDS DB by Nucleotide ID:NM_018071Re-query CCDS DB by Protein ID:NP_060541Link to BLAST:NP_060541.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060541.3 1519 Q8TER5-1 1519 100% 0 0

Chromosomal Locations for CCDS 32041.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 21070397 21070399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21073045 21073242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21073932 21075180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21075332 21075499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21075645 21075765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21076360 21076456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21076563 21076643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21076774 21076890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21078177 21078272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21078373 21078488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21078884 21079010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21080660 21080782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21080873 21081016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21081509 21082119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21082244 21082478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21082831 21082917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21083835 21084050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21084753 21084923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21085689 21085866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21087001 21087105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21087320 21087463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21087968 21088098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21088830 21088871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4560 nt):
ATGGAGCCTGAGCCAGTGGAGGACTGTGTGCAGAGCACTCTCGCCGCCCTGTATCCACCCTTTGAGGCAA
CAGCCCCCACCCTGTTGGGCCAGGTGTTCCAGGTGGTGGAGAGGACTTATCGGGAGGACGCACTGAGGTA
CACGCTGGACTTCCTGGTACCAGCCAAGCACCTGCTTGCCAAGGTCCAGCAGGAAGCCTGTGCCCAATAC
AGTGGATTCCTCTTCTTCCATGAGGGGTGGCCGCTCTGCCTGCATGAACAGGTGGTGGTGCAGCTAGCAG
CCCTACCCTGGCAACTGCTGCGCCCAGGAGACTTCTATCTGCAGGTGGTGCCCTCAGCTGCCCAAGCACC
CCGACTAGCACTCAAGTGTCTGGCCCCTGGGGGTGGGCGGGTGCAGGAGGTTCCTGTGCCCAATGAGGCT
TGTGCCTACCTATTCACACCTGAGTGGCTACAAGGCATCAACAAGGACCGGCCAACAGGTCGCCTCAGTA
CCTGCCTACTGTCTGCGCCCTCTGGGATTCAGCGGCTGCCCTGGGCTGAGCTCATCTGTCCACGATTTGT
GCACAAAGAGGGCCTCATGGTTGGACATCAGCCAAGTACACTGCCCCCAGAACTGCCCTCTGGACCTCCA
GGGCTTCCCAGCCCTCCACTTCCTGAGGAGGCGCTGGGTACCCGGAGTCCTGGGGATGGGCACAATGCCC
CTGTGGAAGGACCTGAGGGCGAGTATGTGGAGCTGTTAGAGGTGACGCTGCCCGTGAGGGGGAGCCCAAC
AGATGCTGAAGGCTCCCCAGGCCTCTCCAGAGTCCGGACGGTACCCACCCGCAAGGGCGCTGGAGGGAAG
GGCCGCCACCGGAGACACCGGGCGTGGATGCACCAGAAGGGCCTGGGGCCTCGGGGCCAGGATGGAGCAC
GCCCACCCGGCGAGGGGAGCAGCACCGGAGCCTCCCCTGAGTCTCCCCCAGGAGCTGAGGCTGTCCCAGA
GGCAGCAGTCTTGGAGGTGTCTGAGCCCCCAGCAGAGGCTGTGGGAGAAGCCTCCGGATCTTGCCCCCTG
AGGCCAGGGGAGCTTAGAGGAGGAGGAGGAGGAGGCCAGGGGGCTGAAGGACCACCTGGTACCCCTCGGA
GAACAGGCAAAGGAAACAGAAGAAAGAAGCGAGCTGCAGGTCGAGGGGCTCTTAGCCGAGGAGGGGACAG
TGCCCCACTGAGCCCTGGGGACAAGGAAGATGCCAGCCACCAAGAAGCCCTTGGCAATCTGCCCTCACCA
AGTGAGCACAAGCTTCCAGAATGCCACCTGGTTAAGGAGGAATATGAAGGCTCAGGGAAGCCAGAATCTG
AGCCAAAAGAGCTCAAAACAGCAGGCGAGAAAGAGCCTCAGCTCTCTGAAGCCTGTGGGCCTACAGAAGA
GGGGGCCGGAGAGAGAGAGCTGGAGGGGCCAGGCCTGCTGTGTATGGCAGGACACACAGGCCCAGAAGGC
CCCCTGTCTGACACTCCAACACCTCCGCTGGAGACTGTGCAGGAAGGAAAAGGGGACAACATTCCAGAAG
AGGCCCTTGCAGTCTCCGTCTCTGATCACCCTGATGTAGCTTGGGACTTGATGGCATCTGGATTCCTCAT
CCTGACGGGAGGGGTGGACCAGAGTGGGCGAGCTCTGCTGACCATTACCCCACCGTGCCCTCCTGAGGAG
CCCCCACCCTCCCGAGACACGCTGAACACAACTCTTCATTACCTCCACTCACTGCTCAGGCCTGATCTAC
AGACACTGGGGCTGTCCGTCCTGCTGGACCTTCGTCAGGCACCTCCACTGCCTCCAGCACTCATTCCTGC
CTTGAGCCAACTTCAGGACTCAGGAGATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGATGAC
CTTCCAACTGAACTCTGTGGATTTCAGGGTGCTGAGGTGCTGTCAGAGAATGATCTGAAAAGAGTGGCCA
AGCCAGAGGAGCTGCAGTGGGAGTTAGGAGGTCACAGGGACCCCTCTCCCAGTCACTGGGTAGAGATACA
CCAGGAAGTGGTAAGGCTATGTCGCCTGTGCCAAGGTGTGCTGGGCTCGGTACGGCAGGCCATTGAGGAG
CTGGAGGGAGCAGCAGAGCCAGAGGAAGAGGAGGCAGTGGGAATGCCCAAGCCACTGCAGAAGGTGCTGG
CAGATCCCCGGCTGACGGCACTGCAGAGGGATGGGGGGGCCATCCTGATGAGGCTGCGCTCCACTCCCAG
CAGCAAGCTGGAGGGCCAAGGCCCAGCTACACTGTATCAGGAAGTGGACGAGGCCATTCACCAGCTTGTG
CGCCTCTCCAACCTGCACGTGCAGCAGCAAGAGCAGCGGCAGTGCCTGCGGCGACTCCAGCAGGTGTTGC
AGTGGCTCTCGGGCCCAGGGGAGGAGCAGCTGGCAAGCTTTGCTATGCCTGGGGACACCTTGTCTGCCCT
GCAGGAGACAGAGCTGCGATTCCGTGCTTTCAGCGCTGAGGTCCAGGAGCGCCTGGCCCAGGCACGGGAG
GCCCTGGCTCTGGAGGAGAATGCCACCTCCCAGAAGGTGCTGGATATCTTTGAACAGCGGCTGGAGCAGG
TTGAGAGTGGCCTCCATCGGGCCCTGCGGCTACAGCGCTTCTTCCAGCAGGCACATGAATGGGTGGATGA
GGGCTTTGCTCGGCTGGCAGGAGCTGGGCCGGGTCGGGAGGCTGTGCTGGCTGCACTGGCCCTGCGGCGG
GCCCCAGAGCCCAGTGCCGGCACCTTCCAGGAGATGCGGGCCCTGGCCCTGGACCTGGGCAGCCCAGCAG
CCCTGCGAGAATGGGGCCGCTGCCAGGCCCGCTGCCAAGAGCTAGAGAGGAGGATCCAGCAACACGTGGG
AGAGGAGGCGAGCCCACGGGGCTACCGACGACGGCGGGCAGACGGTGCCAGCAGTGGAGGGGCCCAGTGG
GGGCCCCGCAGCCCCTCGCCCAGCCTCAGCTCCTTGCTGCTCCCCAGCAGCCCTGGGCCACGGCCAGCCC
CATCCCATTGCTCCCTGGCCCCATGTGGAGAGGACTATGAGGAAGAGGGCCCTGAGCTGGCTCCAGAAGC
AGAGGGCAGGCCCCCAAGAGCTGTGCTGATCCGAGGCCTGGAGGTCACCAGCACTGAGGTGGTAGACAGG
ACGTGCTCACCACGGGAACACGTGCTGCTGGGCCGGGCTAGGGGGCCAGACGGACCCTGGGGAGTAGGCA
CCCCCCGGATGGAGCGCAAGCGAAGCATCAGTGCCCAGCAGCGGCTGGTGTCTGAGCTGATTGCCTGTGA
ACAAGATTACGTGGCCACCTTGAGTGAGCCAGTGCCACCCCCTGGGCCTGAGCTGACGCCTGAACTTCGG
GGCACCTGGGCTGCTGCCCTGAGTGCCCGGGAAAGGCTTCGCAGCTTCCACCGGACACACTTTCTGCGGG
AGCTTCAGGGCTGCGCCACCCACCCCCTACGCATTGGGGCCTGCTTCCTTCGCCACGGGGACCAGTTCAG
CCTTTATGCACAGTACGTGAAGCACCGACACAAACTGGAGAATGGTCTGGCTGCGCTCAGTCCCTTAAGC
AAGGGCTCCATGGAGGCTGGCCCTTACCTGCCCCGAGCCCTGCAGCAGCCTCTGGAACAGCTGACTCGGT
ATGGGCGGCTCCTGGAGGAGCTCCTGAGGGAAGCTGGGCCTGAGCTCAGTTCTGAGTGCCGGGCCCTTGG
GGCTGCTGTACAGCTGCTCCGGGAACAAGAGGCCCGTGGCAGAGACCTGCTGGCCGTGGAGGCGGTGCGT
GGCTGTGAGATAGATCTGAAGGAGCAGGGACAGCTCTTGCATCGAGACCCCTTCACTGTCATCTGTGGCC
GAAAGAAGTGCCTTCGCCATGTCTTTCTCTTCGAGCATCTCCTCCTGTTCAGCAAGCTCAAGGGCCCTGA
AGGGGGGTCAGAGATGTTTGTTTACAAGCAGGCCTTTAAGACTGCTGATATGGGGCTGACAGAAAACATC
GGGGACAGCGGACTCTGCTTTGAGTTGTGGTTTCGGCGGCGGCGTGCACGAGAGGCATACACTCTGCAGG
CAACCTCACCAGAGATCAAACTCAAGTGGACAAGTTCTATTGCCCAGCTGCTGTGGAGACAGGCAGCCCA
CAACAAGGAGCTCCGAGTGCAGCAGATGGTGTCCATGGGCATTGGGAATAAACCCTTCCTGGACATCAAA
GCCCTTGGGGAGCGGACGCTGAGTGCCCTGCTCACTGGAAGAGCCGCCCGCACCCGGGCCTCCGTGGCCG
TGTCATCCTTTGAGCATGCCGGCCCCTCCCTTCCCGGCCTTTCGCCGGGAGCCTGCTCCCTGCCTGCCCG
CGTCGAGGAGGAGGCCTGGGATCTGGACGTCAAGCAAATTTCCCTGGCCCCAGAAACACTTGACTCTTCT
GGAGATGTGTCCCCAGGACCAAGAAACAGCCCCAGCCTGCAACCCCCCCACCCTGGGAGCAGCACTCCCA
CCCTGGCCAGTCGAGGGATCTTAGGGCTATCCCGACAGAGTCATGCTCGAGCCCTGAGTGACCCCACCAC
GCCTCTGTGA

Translation (1519 aa):
MEPEPVEDCVQSTLAALYPPFEATAPTLLGQVFQVVERTYREDALRYTLDFLVPAKHLLAKVQQEACAQY
SGFLFFHEGWPLCLHEQVVVQLAALPWQLLRPGDFYLQVVPSAAQAPRLALKCLAPGGGRVQEVPVPNEA
CAYLFTPEWLQGINKDRPTGRLSTCLLSAPSGIQRLPWAELICPRFVHKEGLMVGHQPSTLPPELPSGPP
GLPSPPLPEEALGTRSPGDGHNAPVEGPEGEYVELLEVTLPVRGSPTDAEGSPGLSRVRTVPTRKGAGGK
GRHRRHRAWMHQKGLGPRGQDGARPPGEGSSTGASPESPPGAEAVPEAAVLEVSEPPAEAVGEASGSCPL
RPGELRGGGGGGQGAEGPPGTPRRTGKGNRRKKRAAGRGALSRGGDSAPLSPGDKEDASHQEALGNLPSP
SEHKLPECHLVKEEYEGSGKPESEPKELKTAGEKEPQLSEACGPTEEGAGERELEGPGLLCMAGHTGPEG
PLSDTPTPPLETVQEGKGDNIPEEALAVSVSDHPDVAWDLMASGFLILTGGVDQSGRALLTITPPCPPEE
PPPSRDTLNTTLHYLHSLLRPDLQTLGLSVLLDLRQAPPLPPALIPALSQLQDSGDPPLVQRLLILIHDD
LPTELCGFQGAEVLSENDLKRVAKPEELQWELGGHRDPSPSHWVEIHQEVVRLCRLCQGVLGSVRQAIEE
LEGAAEPEEEEAVGMPKPLQKVLADPRLTALQRDGGAILMRLRSTPSSKLEGQGPATLYQEVDEAIHQLV
RLSNLHVQQQEQRQCLRRLQQVLQWLSGPGEEQLASFAMPGDTLSALQETELRFRAFSAEVQERLAQARE
ALALEENATSQKVLDIFEQRLEQVESGLHRALRLQRFFQQAHEWVDEGFARLAGAGPGREAVLAALALRR
APEPSAGTFQEMRALALDLGSPAALREWGRCQARCQELERRIQQHVGEEASPRGYRRRRADGASSGGAQW
GPRSPSPSLSSLLLPSSPGPRPAPSHCSLAPCGEDYEEEGPELAPEAEGRPPRAVLIRGLEVTSTEVVDR
TCSPREHVLLGRARGPDGPWGVGTPRMERKRSISAQQRLVSELIACEQDYVATLSEPVPPPGPELTPELR
GTWAAALSARERLRSFHRTHFLRELQGCATHPLRIGACFLRHGDQFSLYAQYVKHRHKLENGLAALSPLS
KGSMEAGPYLPRALQQPLEQLTRYGRLLEELLREAGPELSSECRALGAAVQLLREQEARGRDLLAVEAVR
GCEIDLKEQGQLLHRDPFTVICGRKKCLRHVFLFEHLLLFSKLKGPEGGSEMFVYKQAFKTADMGLTENI
GDSGLCFELWFRRRRAREAYTLQATSPEIKLKWTSSIAQLLWRQAAHNKELRVQQMVSMGIGNKPFLDIK
ALGERTLSALLTGRAARTRASVAVSSFEHAGPSLPGLSPGACSLPARVEEEAWDLDVKQISLAPETLDSS
GDVSPGPRNSPSLQPPHPGSSTPTLASRGILGLSRQSHARALSDPTTPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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