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Report for CCDS3204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3204.1 Public Homo sapiens 3 GOLIM4 24 110 108 CCDS HistoryNCBI Gene:27333Re-query CCDS DB by CCDS ID:3204.1Re-query CCDS DB by GeneID:27333See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3204.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000470487.6 ENSP00000417354.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000470487.6Link to Ensembl Protein Viewer:ENSP00000417354.1Re-query CCDS DB by Nucleotide ID:ENST00000470487Re-query CCDS DB by Protein ID:ENSP00000417354
Original member Current member NCBI NM_014498.5 NP_055313.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014498.5Link to Protein Sequence:NP_055313.1Re-query CCDS DB by Nucleotide ID:NM_014498Re-query CCDS DB by Protein ID:NP_055313Link to BLAST:NP_055313.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055313.1 696 O00461 696 100% 0 0

Chromosomal Locations for CCDS 3204.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 168010269 168010418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168010743 168010823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168024526 168024594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168024928 168025095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168027728 168027837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168029223 168029302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168029780 168030036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168032520 168032852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168036836 168036994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168040786 168040869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168041392 168041474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168043379 168043529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168044828 168044881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168046950 168046999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168048291 168048365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168095099 168095285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGGGAAACGGGATGTGCTCCCGAAAGCAGAAGCGGATTTTCCAGACGCTGCTGCTGCTGACCGTCGTGT
TCGGCTTTCTCTACGGCGCGATGCTCTACTACGAGCTGCAGACGCAGCTGCGGAAAGCCGAGGCGGTGGC
GCTCAAGTACCAGCAGCACCAGGAGTCCCTCTCCGCCCAGTTACAAGTTGTATATGAACACAGATCAAGA
TTAGAGAAATCCTTGCAAAAAGAAAGACTTGAACATAAAAAAGCAAAGGAAGATTTTCTTGTTTATAAGT
TAGAAGCACAAGAAACATTAAATAAAGGAAGGCAAGATTCCAATAGCAGATACAGTGCACTGAATGTCCA
ACATCAGATGTTGAAAAGCCAACACGAGGAGCTAAAGAAACAGCACAGTGACTTGGAAGAGGAACATCGC
AAACAAGGGGAAGACTTCAGTAGAACATTTAATGACCATAAGCAAAAATACTTGCAGCTCCAGCAAGAAA
AAGAACAAGAACTTTCTAAGCTAAAAGAGACTGTATACAATTTGAGAGAAGAGAATAGACAACTAAGGAA
AGCACACCAAGACATACATACACAGCTTCAAGATGTCAAGCAACAGCATAAGAATTTACTCTCCGAGCAT
GAACAACTTGTAGTGACTTTGGAAGACCACAAGAGTGCACTAGCTGCTGCACAGACTCAAGTTGCAGAAT
ATAAACAACTGAAAGATACTCTGAATAGGATTCCAAGCCTTCGAAAACCTGATCCAGCAGAACAGCAAAA
TGTGACCCAGGTGGCACATTCTCCACAAGGTTACAACACAGCAAGGGAGAAGCCAACCCGAGAGGTGCAG
GAGGTGTCTCGAAATAATGATGTGTGGCAGAACCATGAAGCAGTTCCTGGAAGAGCAGAAGACACAAAAC
TCTATGCTCCCACCCATAAGGAGGCAGAATTTCAGGCTCCCCCAGAGCCAATCCAACAAGAAGTGGAACG
CAGAGAACCTGAGGAGCATCAGGTGGAAGAGGAGCACAGAAAGGCCCTGGAGGAGGAAGAAATGGAGCAG
GTCGGGCAAGCAGAACATCTTGAGGAGGAACACGATCCATCACCAGAGGAGCAGGATCGGGAGTGGAAAG
AGCAGCATGAGCAACGAGAAGCAGCCAACCTCCTGGAAGGGCACGCGCGTGCTGAGGTGTACCCTTCAGC
CAAGCCAATGATCAAATTCCAATCACCCTATGAGGAACAGTTGGAACAGCAGAGACTGGCAGTGCAGCAG
GTGGAGGAGGCCCAGCAGCTGCGGGAACACCAGGAAGCTTTGCACCAGCAGAGGCTGCAGGGGCACTTAC
TACGGCAGCAGGAACAGCAGCAGCAGCAGGTGGCAAGAGAGATGGCCCTGCAGAGGCAGGCTGAGCTTGA
GGAGGGCCGGCCGCAGCACCAGGAGCAGCTCCGGCAGCAAGCTCATTATGATGCTATGGATAATGATATC
GTTCAGGGAGCAGAGGACCAGGGAATCCAAGGAGAGGAAGGAGCCTATGAAAGAGACAACCAGCACCAAG
ATGAAGCAGAAGGAGATCCAGGTAATAGACATGAGCCTCGTGAACAAGGACCCCGAGAAGCCGACCCAGA
ATCTGAGGCAGATAGGGCAGCTGTAGAAGATATAAACCCAGCAGATGACCCTAATAATCAAGGTGAGGAT
GAATTTGAAGAAGCCGAGCAAGTGAGAGAAGAAAATTTGCCAGATGAAAATGAAGAGCAAAAACAAAGTA
ATCAAAAGCAAGAGAATACAGAAGTGGAGGAACATTTGGTGATGGCAGGAAATCCAGACCAGCAGGAGGA
CAATGTTGATGAACAGTACCAGGAAGAGGCAGAAGAGGAGGTTCAGGAAGATTTGACTGAAGAGAAAAAA
AGGGAACTGGAGCATAATGCTGAAGAGACCTATGGTGAAAATGATGAAAATACTGATGATAAAAATAATG
ATGGAGAAGAGCAAGAAGTTCGAGATGACAACCGCCCCAAAGGCCGAGAGGAACACTACGAGGAGGAAGA
AGAGGAGGAAGAAGACGGGGCTGCAGTTGCTGAGAAATCACATCGAAGAGCTGAAATGTAG

Translation (696 aa):
MGNGMCSRKQKRIFQTLLLLTVVFGFLYGAMLYYELQTQLRKAEAVALKYQQHQESLSAQLQVVYEHRSR
LEKSLQKERLEHKKAKEDFLVYKLEAQETLNKGRQDSNSRYSALNVQHQMLKSQHEELKKQHSDLEEEHR
KQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKETVYNLREENRQLRKAHQDIHTQLQDVKQQHKNLLSEH
EQLVVTLEDHKSALAAAQTQVAEYKQLKDTLNRIPSLRKPDPAEQQNVTQVAHSPQGYNTAREKPTREVQ
EVSRNNDVWQNHEAVPGRAEDTKLYAPTHKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKALEEEEMEQ
VGQAEHLEEEHDPSPEEQDREWKEQHEQREAANLLEGHARAEVYPSAKPMIKFQSPYEEQLEQQRLAVQQ
VEEAQQLREHQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQAHYDAMDNDI
VQGAEDQGIQGEEGAYERDNQHQDEAEGDPGNRHEPREQGPREADPESEADRAAVEDINPADDPNNQGED
EFEEAEQVREENLPDENEEQKQSNQKQENTEVEEHLVMAGNPDQQEDNVDEQYQEEAEEEVQEDLTEEKK
RELEHNAEETYGENDENTDDKNNDGEEQEVRDDNRPKGREEHYEEEEEEEEDGAAVAEKSHRRAEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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