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Report for CCDS31947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31947.1 Public Homo sapiens 13 C1QTNF9B 24 110 108 CCDS HistoryNCBI Gene:387911Re-query CCDS DB by CCDS ID:31947.1Re-query CCDS DB by GeneID:387911See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31947.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382137.7 ENSP00000371572.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382137.7Link to Ensembl Protein Viewer:ENSP00000371572.3Re-query CCDS DB by Nucleotide ID:ENST00000382137Re-query CCDS DB by Protein ID:ENSP00000371572
Original member NCBI NM_001007537.2 NP_001007538.1 Updated not alive Link to Nucleotide Sequence:NM_001007537.2Link to Protein Sequence:NP_001007538.1Re-query CCDS DB by Nucleotide ID:NM_001007537Re-query CCDS DB by Protein ID:NP_001007538
Current member NCBI NM_001007537.3 NP_001007538.1 Accepted alive Link to Nucleotide Sequence:NM_001007537.3Link to Protein Sequence:NP_001007538.1Re-query CCDS DB by Nucleotide ID:NM_001007537Re-query CCDS DB by Protein ID:NP_001007538Link to BLAST:NP_001007538.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007538.1 333 B2RNN3-1 333 100% 0 0

Chromosomal Locations for CCDS 31947.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23891289 23892061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23894139 23894201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23896821 23896986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGAGGATCTGGTGGCTTCTGCTTGCCATTGAAATCTGCACAGGGAACATAAACTCACAGGACACCTGCA
GGCAAGGGCACCCTGGAATCCCTGGGAACCCCGGTCACAATGGTCTGCCTGGAAGAGATGGACGAGACGG
AGCGAAGGGTGACAAAGGCGATGCAGGAGAACCAGGATGTCCTGGCAGCCCGGGGAAGGATGGGACGAGT
GGAGAGAAGGGAGAACGAGGAGCAGATGGAAAAGTTGAAGCAAAAGGCATCAAAGGTGATCAAGGCTCAA
GAGGATCCCCAGGAAAACATGGCCCCAAGGGGCTTGCAGGGCCCATGGGAGAGAAAGGCCTCCGAGGAGA
GACTGGGCCTCAGGGGCAGAAGGGGAATAAGGGTGACGTGGGTCCCACTGGTCCTGAGGGGCCAAGGGGC
AACATTGGGCCTTTGGGCCCAACTGGTTTACCGGGCCCCATGGGCCCTATTGGAAAGCCTGGTCCCAAGG
GAGAAGCTGGACCCACGGGGCCCCAGGGTGAGCCAGGAGTCCGGGGAATAAGAGGCTGGAAAGGAGATCG
AGGAGAGAAAGGGAAAATCGGTGAGACTCTAGTCTTGCCAAAAAGTGCTTTCACTGTGGGGCTCACGGTG
CTGAGCAAGTTTCCTTCTTCAGATGTGCCCATTAAATTTGATAAGATCCTGTATAATGAATTCAACCATT
ATGATACAGCAGTGGGGAAATTCACGTGCCACATTGCTGGGGTCTATTACTTCACCTACCACATCACTGT
TTTCTCCAGGAATGTTCAGGTGTCTTTGGTCAAAAACGGAGTAAAAATACTGCACACCAGAGATGCTTAC
GTGAGCTCTGAGGACCAGGCCTCTGGCAGCATTGTCCTGCAGCTGAAGCTCGGGGATGAGATGTGGCTGC
AGGTGACAGGAGGAGAGAGGTTCAATGGCTTGTTTGCTGATGAGGACGATGACACAACTTTCACAGGGTT
CCTTCTGTTCAGCAGCCAGTGA

Translation (333 aa):
MRIWWLLLAIEICTGNINSQDTCRQGHPGIPGNPGHNGLPGRDGRDGAKGDKGDAGEPGCPGSPGKDGTS
GEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPMGEKGLRGETGPQGQKGNKGDVGPTGPEGPRG
NIGPLGPTGLPGPMGPIGKPGPKGEAGPTGPQGEPGVRGIRGWKGDRGEKGKIGETLVLPKSAFTVGLTV
LSKFPSSDVPIKFDKILYNEFNHYDTAVGKFTCHIAGVYYFTYHITVFSRNVQVSLVKNGVKILHTRDAY
VSSEDQASGSIVLQLKLGDEMWLQVTGGERFNGLFADEDDDTTFTGFLLFSSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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