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Report for CCDS3194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3194.1 Public Homo sapiens 3 NMD3 24 110 108 CCDS HistoryNCBI Gene:51068Re-query CCDS DB by CCDS ID:3194.1Re-query CCDS DB by GeneID:51068See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3194.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000351193.7 ENSP00000307525.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000351193.7Link to Ensembl Protein Viewer:ENSP00000307525.2Re-query CCDS DB by Nucleotide ID:ENST00000351193Re-query CCDS DB by Protein ID:ENSP00000307525
Original member Current member EBI ENST00000460469.1 ENSP00000419004.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000460469.1Link to Ensembl Protein Viewer:ENSP00000419004.1Re-query CCDS DB by Nucleotide ID:ENST00000460469Re-query CCDS DB by Protein ID:ENSP00000419004
Original member Current member NCBI NM_015938.5 NP_057022.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015938.5Link to Protein Sequence:NP_057022.2Re-query CCDS DB by Nucleotide ID:NM_015938Re-query CCDS DB by Protein ID:NP_057022Link to BLAST:NP_057022.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057022.2 503 Q96D46 503 100% 0 0

Chromosomal Locations for CCDS 3194.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 161222014 161222057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161224930 161225064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161227247 161227343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161233399 161233479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161234727 161234855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161235122 161235212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161238113 161238191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161238730 161238826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161241046 161241163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161242508 161242653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161246336 161246448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161247258 161247330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161249454 161249560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161250256 161250326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 161250780 161250910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGAGTATATGGCAGAATCCACCGACCGCAGCCCTGGACACATCTTGTGCTGTGAGTGTGGTGTTCCGA
TAAGTCCAAATCCTGCCAATATTTGTGTGGCCTGTTTGCGAAGTAAAGTGGACATCAGCCAAGGTATTCC
GAAACAAGTCTCGATTTCGTTCTGCAAACAATGTCAAAGGTATTTTCAACCACCAGGAACTTGGATACAG
TGTGCTTTAGAATCCAGGGAACTTCTTGCTTTGTGCTTGAAAAAAATCAAAGCCCCTCTGAGTAAGGTAC
GGCTTGTAGATGCAGGCTTTGTTTGGACTGAGCCTCATTCTAAGAGACTTAAAGTTAAACTGACTATTCA
GAAAGAGGTGATGAATGGTGCTATCCTTCAACAAGTGTTTGTGGTGGATTATGTTGTTCAGTCCCAAATG
TGTGGAGATTGCCATAGAGTAGAAGCTAAGGATTTCTGGAAGGCTGTGATTCAAGTGAGGCAAAAGACTT
TGCATAAAAAAACTTTCTACTATCTGGAACAGTTAATTCTGAAATATGGAATGCATCAGAATACACTTCG
TATCAAAGAGATTCATGATGGTCTGGATTTTTATTATTCCTCAAAACAACATGCTCAGAAGATGGTCGAA
TTTCTTCAGTGTACAGTTCCCTGTAGATACAAAGCATCACAAAGACTGATCTCTCAAGATATCCATAGTA
ACACATACAATTACAAAAGCACTTTTTCTGTGGAAATTGTTCCAATATGCAAGGATAATGTTGTCTGTCT
GTCTCCAAAACTGGCACAAAGCCTGGGAAATATGAACCAGATTTGTGTGTGTATTCGAGTAACCAGTGCC
ATTCACCTCATTGATCCAAACACCCTACAAGTGGCAGATATTGATGGGAGCACTTTCTGGAGTCACCCTT
TCAATAGTTTATGTCATCCCAAACAGCTAGAGGAGTTTATTGTGATGGAATGCAGCATAGTCCAAGATAT
AAAACGTGCTGCAGGTGCTGGAATGATATCAAAAAAGCATACCCTCGGGGAAGTCTGGGTACAGAAGACA
TCTGAAATGAATACAGATAAACAGTATTTTTGTCGTACTCATTTGGGACATCTTCTAAATCCCGGAGACC
TGGTGTTAGGGTTTGATTTGGCCAACTGTAACTTAAATGATGAGCATGTCAACAAAATGAACTCAGATAG
AGTTCCAGATGTGGTATTAATCAAGAAGAGCTATGACCGGACCAAACGTCAGCGTCGTAGAAACTGGAAA
TTGAAAGAGCTTGCAAGAGAGAGAGAAAACATGGATACAGATGATGAAAGGCAATACCAAGATTTTCTTG
AAGATCTTGAAGAAGATGAGGCAATTCGAAAAAATGTCAACATTTACAGAGATTCAGCCATCCCTGTGGA
AAGTGACACCGATGATGAAGGAGCACCTCGAATTAGTCTGGCTGAGATGCTTGAAGACCTTCATATTTCC
CAAGATGCCACTGGTGAAGAAGGTGCATCAATGCTGACATAA

Translation (503 aa):
MEYMAESTDRSPGHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQ
CALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQM
CGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVE
FLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSA
IHLIDPNTLQVADIDGSTFWSHPFNSLCHPKQLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKT
SEMNTDKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRNWK
LKELARERENMDTDDERQYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEMLEDLHIS
QDATGEEGASMLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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