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Report for CCDS3189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3189.1 Public Homo sapiens 3 SMC4 24 110 108 CCDS HistoryNCBI Gene:10051Re-query CCDS DB by CCDS ID:3189.1Re-query CCDS DB by GeneID:10051See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3189.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344722.5 ENSP00000341382.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344722.5Link to Ensembl Protein Viewer:ENSP00000341382.5Re-query CCDS DB by Nucleotide ID:ENST00000344722Re-query CCDS DB by Protein ID:ENSP00000341382
Original member Current member EBI ENST00000357388.8 ENSP00000349961.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357388.8Link to Ensembl Protein Viewer:ENSP00000349961.3Re-query CCDS DB by Nucleotide ID:ENST00000357388Re-query CCDS DB by Protein ID:ENSP00000349961
Original member Current member NCBI NM_001002800.3 NP_001002800.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001002800.3Link to Protein Sequence:NP_001002800.1Re-query CCDS DB by Nucleotide ID:NM_001002800Re-query CCDS DB by Protein ID:NP_001002800Link to BLAST:NP_001002800.1
Original member Current member NCBI NM_005496.3 NP_005487.3 Accepted alive Link to Nucleotide Sequence:NM_005496.3Link to Protein Sequence:NP_005487.3Re-query CCDS DB by Nucleotide ID:NM_005496Re-query CCDS DB by Protein ID:NP_005487Link to BLAST:NP_005487.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002800.1 1288 Q9NTJ3-1 1288 100% 0 0
NP_005487.3 1288 Q9NTJ3-1 1288 100% 0 0

Chromosomal Locations for CCDS 3189.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 160400827 160400965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160401915 160402093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160402676 160402867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160404328 160404504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160411920 160412084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160412326 160412453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160413473 160413613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160414367 160414517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160416251 160416415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160417723 160417956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160419358 160419543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160420740 160420901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160423425 160423650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160423761 160423840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160424867 160425019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160426074 160426200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160428753 160428942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160430599 160430743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160431032 160431205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160431643 160431825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160432283 160432515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160433026 160433209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160433657 160433809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3867 nt):
ATGCCCCGTAAAGGCACCCAGCCCTCCACTGCCCGGCGCAGAGAGGAAGGGCCGCCGCCGCCGTCCCCTG
ACGGCGCCAGCAGCGACGCGGAGCCTGAGCCGCCGTCCGGCCGCACGGAGAGCCCAGCCACCGCCGCAGA
GACTGCAAGTGAGGAACTTGATAATAGAAGTTTAGAAGAGATTTTGAACAGCATTCCTCCTCCCCCGCCT
CCAGCAATGACCAATGAAGCTGGAGCTCCTCGGCTTATGATAACTCATATTGTAAACCAGAACTTCAAAT
CCTATGCTGGGGAGAAAATTCTGGGACCTTTCCATAAGCGCTTTTCCTGTATTATCGGGCCAAATGGCAG
TGGCAAATCCAATGTTATTGATTCTATGCTTTTTGTGTTTGGCTATCGAGCACAAAAAATAAGATCTAAA
AAACTCTCAGTATTAATACATAATTCTGATGAACACAAGGACATTCAGAGTTGTACAGTAGAAGTTCATT
TTCAAAAGATAATTGATAAGGAAGGGGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTATCCAG
AACGGCCTGCAGAGATAATACTTCTGTCTATCACATAAGTGGAAAGAAAAAGACATTTAAGGATGTTGGA
AATCTTCTTCGAAGCCATGGAATTGACTTGGACCATAATAGATTTTTAATTTTACAGGGTGAAGTTGAAC
AAATTGCTATGATGAAACCAAAAGGCCAGACTGAACACGATGAGGGTATGCTTGAATATTTAGAAGATAT
AATTGGTTGTGGACGGCTAAATGAACCTATTAAAGTCTTGTGTCGGAGAGTTGAAATATTAAATGAACAC
AGAGGAGAGAAGTTAAACAGGGTAAAGATGGTGGAAAAGGAAAAGGATGCCTTAGAAGGAGAGAAAAACA
TAGCTATCGAATTTCTTACCTTGGAAAATGAAATATTTAGAAAAAAGAATCATGTTTGTCAATATTATAT
TTATGAGTTGCAGAAACGAATTGCTGAAATGGAAACTCAAAAGGAAAAAATTCATGAAGATACCAAAGAA
ATTAATGAGAAGAGCAATATACTATCAAATGAAATGAAAGCTAAGAATAAAGATGTAAAAGATACAGAAA
AGAAACTGAATAAAATTACAAAATTTATTGAGGAGAATAAAGAAAAATTTACACAGCTAGATTTGGAAGA
TGTTCAAGTTAGAGAAAAGTTAAAACATGCCACGAGTAAAGCCAAAAAACTGGAGAAACAACTTCAAAAA
GATAAAGAAAAGGTTGAAGAATTTAAAAGTATACCTGCCAAGAGTAACAATATCATTAATGAAACAACAA
CCAGAAACAATGCCCTCGAGAAGGAAAAAGAGAAAGAAGAAAAAAAATTAAAGGAAGTTATGGATAGCCT
TAAACAGGAAACACAAGGGCTTCAGAAAGAAAAAGAAAGTCGAGAGAAAGAACTTATGGGTTTCAGCAAA
TCGGTAAATGAAGCACGTTCAAAGATGGATGTAGCCCAGTCAGAACTTGATATCTATCTCAGTCGTCATA
ATACTGCAGTGTCTCAATTAACTAAGGCTAAGGAAGCTCTAATTGCAGCTTCTGAGACTCTCAAAGAAAG
GAAAGCTGCAATCAGAGATATAGAAGGAAAACTCCCTCAAACTGAACAAGAATTAAAGGAGAAAGAAAAA
GAACTTCAAAAACTTACACAAGAAGAAACAAACTTTAAAAGTTTGGTTCATGATCTCTTTCAAAAAGTTG
AAGAAGCAAAGAGCTCATTAGCAATGAATCGAAGTAGGGGGAAAGTCCTTGATGCAATAATTCAAGAAAA
AAAATCTGGCAGGATTCCAGGAATATATGGAAGATTGGGGGACTTAGGAGCCATTGATGAAAAATACGAC
GTGGCTATATCATCCTGTTGTCATGCACTGGACTACATTGTTGTTGATTCTATTGATATAGCCCAAGAAT
GTGTAAACTTCCTTAAAAGACAAAATATTGGAGTTGCAACCTTTATAGGTTTAGATAAGATGGCTGTATG
GGCGAAAAAGATGACCGAAATTCAAACTCCTGAAAATACTCCTCGTTTATTTGATTTAGTAAAAGTAAAA
GATGAGAAAATTCGCCAAGCTTTTTATTTTGCTTTACGAGATACCTTAGTAGCTGACAACTTGGATCAAG
CCACAAGAGTAGCATATCAAAAAGATAGAAGATGGAGAGTGGTAACTTTACAGGGACAAATCATAGAACA
GTCAGGTACAATGACTGGTGGTGGAAGCAAAGTAATGAAAGGAAGAATGGGTTCCTCACTTGTTATTGAA
ATCTCTGAAGAAGAGGTAAACAAAATGGAATCACAGTTGCAAAACGACTCTAAAAAAGCAATGCAAATCC
AAGAACAGAAAGTACAACTTGAAGAAAGAGTAGTTAAGTTACGGCATAGTGAACGAGAAATGAGGAACAC
ACTAGAAAAATTTACTGCAAGCATCCAGCGTTTAATAGAGCAAGAAGAATATTTGAATGTCCAAGTTAAG
GAACTTGAAGCTAATGTACTTGCTACAGCCCCTGACAAAAAAAAGCAGAAATTGCTAGAAGAAAACGTTA
GTGCTTTCAAAACAGAATATGATGCTGTGGCTGAGAAAGCTGGTAAAGTAGAAGCTGAGGTTAAACGCTT
ACACAATACCATCGTAGAAATCAATAATCATAAACTCAAGGCCCAACAAGACAAACTTGATAAAATAAAT
AAGCAATTAGATGAATGTGCTTCTGCTATTACTAAAGCCCAAGTAGCAATCAAGACTGCTGACAGAAACC
TTCAAAAGGCACAAGACTCTGTCTTGCGTACAGAGAAAGAAATAAAAGATACTGAGAAAGAGGTGGATGA
CCTAACAGCAGAGCTGAAAAGTCTTGAGGACAAAGCAGCAGAGGTCGTAAAGAATACAAATGCTGCAGAG
GAATCCTTACCAGAGATCCAGAAAGAACATCGCAATCTGCTTCAAGAATTAAAAGTTATTCAAGAAAATG
AACATGCTCTTCAAAAAGATGCACTTAGTATTAAGTTGAAACTTGAACAAATAGATGGTCACATTGCTGA
ACATAATTCTAAAATAAAATATTGGCACAAAGAGATTTCAAAAATATCACTGCATCCTATAGAAGATAAT
CCTATTGAAGAGATTTCGGTTCTAAGCCCAGAGGATCTTGAAGCGATCAAGAATCCAGATTCTATAACAA
ATCAAATTGCACTTTTGGAAGCCCGGTGTCATGAAATGAAACCAAACCTCGGTGCCATCGCAGAGTATAA
AAAGAAGGAAGAATTGTATTTGCAACGGGTAGCAGAATTGGACAAAATTACTTATGAAAGAGACAGTTTT
AGACAGGCATATGAAGATCTTCGGAAACAAAGGCTTAATGAATTTATGGCAGGTTTTTATATAATAACAA
ATAAATTAAAGGAAAATTACCAAATGCTTACTTTGGGAGGGGACGCCGAACTCGAGCTTGTAGACAGCTT
GGATCCTTTCTCTGAAGGAATCATGTTCAGTGTTCGACCACCTAAGAAAAGTTGGAAAAAGATCTTCAAC
CTTTCGGGAGGAGAGAAAACACTTAGTTCATTGGCTTTAGTATTTGCTCTTCACCACTACAAGCCCACTC
CCCTTTACTTCATGGATGAGATTGATGCAGCCCTTGATTTTAAAAATGTGTCCATTGTTGCATTTTATAT
ATATGAACAAACAAAAAATGCACAGTTCATAATAATTTCTCTTCGAAATAATATGTTTGAGATTTCGGAT
AGACTTATTGGAATTTACAAGACATACAACATAACAAAAAGTGTTGCTGTAAATCCAAAAGAAATTGCAT
CTAAGGGACTTTGTTGA

Translation (1288 aa):
MPRKGTQPSTARRREEGPPPPSPDGASSDAEPEPPSGRTESPATAAETASEELDNRSLEEILNSIPPPPP
PAMTNEAGAPRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSK
KLSVLIHNSDEHKDIQSCTVEVHFQKIIDKEGDDYEVIPNSNFYVSRTACRDNTSVYHISGKKKTFKDVG
NLLRSHGIDLDHNRFLILQGEVEQIAMMKPKGQTEHDEGMLEYLEDIIGCGRLNEPIKVLCRRVEILNEH
RGEKLNRVKMVEKEKDALEGEKNIAIEFLTLENEIFRKKNHVCQYYIYELQKRIAEMETQKEKIHEDTKE
INEKSNILSNEMKAKNKDVKDTEKKLNKITKFIEENKEKFTQLDLEDVQVREKLKHATSKAKKLEKQLQK
DKEKVEEFKSIPAKSNNIINETTTRNNALEKEKEKEEKKLKEVMDSLKQETQGLQKEKESREKELMGFSK
SVNEARSKMDVAQSELDIYLSRHNTAVSQLTKAKEALIAASETLKERKAAIRDIEGKLPQTEQELKEKEK
ELQKLTQEETNFKSLVHDLFQKVEEAKSSLAMNRSRGKVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYD
VAISSCCHALDYIVVDSIDIAQECVNFLKRQNIGVATFIGLDKMAVWAKKMTEIQTPENTPRLFDLVKVK
DEKIRQAFYFALRDTLVADNLDQATRVAYQKDRRWRVVTLQGQIIEQSGTMTGGGSKVMKGRMGSSLVIE
ISEEEVNKMESQLQNDSKKAMQIQEQKVQLEERVVKLRHSEREMRNTLEKFTASIQRLIEQEEYLNVQVK
ELEANVLATAPDKKKQKLLEENVSAFKTEYDAVAEKAGKVEAEVKRLHNTIVEINNHKLKAQQDKLDKIN
KQLDECASAITKAQVAIKTADRNLQKAQDSVLRTEKEIKDTEKEVDDLTAELKSLEDKAAEVVKNTNAAE
ESLPEIQKEHRNLLQELKVIQENEHALQKDALSIKLKLEQIDGHIAEHNSKIKYWHKEISKISLHPIEDN
PIEEISVLSPEDLEAIKNPDSITNQIALLEARCHEMKPNLGAIAEYKKKEELYLQRVAELDKITYERDSF
RQAYEDLRKQRLNEFMAGFYIITNKLKENYQMLTLGGDAELELVDSLDPFSEGIMFSVRPPKKSWKKIFN
LSGGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDFKNVSIVAFYIYEQTKNAQFIIISLRNNMFEISD
RLIGIYKTYNITKSVAVNPKEIASKGLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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