NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3181.1 Public Homo sapiens 3 RSRC1 24 110 108 CCDS HistoryNCBI Gene:51319Re-query CCDS DB by CCDS ID:3181.1Re-query CCDS DB by GeneID:51319See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3181.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295930.7 ENSP00000295930.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000295930.7Link to Ensembl Protein Viewer:ENSP00000295930.3Re-query CCDS DB by Nucleotide ID:ENST00000295930Re-query CCDS DB by Protein ID:ENSP00000295930
Original member Current member EBI ENST00000480820.5 ENSP00000420150.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000480820.5Link to Ensembl Protein Viewer:ENSP00000420150.1Re-query CCDS DB by Nucleotide ID:ENST00000480820Re-query CCDS DB by Protein ID:ENSP00000420150
Original member Current member EBI ENST00000611884.5 ENSP00000481697.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000611884.5Link to Ensembl Protein Viewer:ENSP00000481697.1Re-query CCDS DB by Nucleotide ID:ENST00000611884Re-query CCDS DB by Protein ID:ENSP00000481697
Original member Current member NCBI NM_001271838.2 NP_001258767.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001271838.2Link to Protein Sequence:NP_001258767.1Re-query CCDS DB by Nucleotide ID:NM_001271838Re-query CCDS DB by Protein ID:NP_001258767Link to BLAST:NP_001258767.1
Original member Current member NCBI NM_016625.4 NP_057709.2 Accepted alive Link to Nucleotide Sequence:NM_016625.4Link to Protein Sequence:NP_057709.2Re-query CCDS DB by Nucleotide ID:NM_016625Re-query CCDS DB by Protein ID:NP_057709Link to BLAST:NP_057709.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258767.1 334 Q96IZ7-1 334 100% 0 0
NP_057709.2 334 Q96IZ7-1 334 100% 0 0

Chromosomal Locations for CCDS 3181.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 158122105 158122298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158123866 158123991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158203072 158203245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158298039 158298075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158354857 158354908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158460935 158461003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158537092 158537198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158543335 158543487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158544183 158544275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGGACGTCGGTCATCAGATACTGAAGAAGAAAGCAGAAGCAAGAGAAAAAAGAAACACCGTAGACGGT
CCTCCTCGAGCAGTTCTTCAGATAGTAGAACATACAGCCGAAAGAAAGGAGGAAGGAAATCAAGATCAAA
GTCAAGATCTTGGTCCAGAGATCTTCAGCCTCGTTCACATTCTTATGATAGAAGACGCAGGCATCGATCA
AGCAGTAGCTCTTCTTATGGCTCCAGAAGGAAACGAAGTCGAAGTCGTTCAAGGGGTCGAGGGAAATCCT
ATAGAGTTCAGAGGTCTAGGTCAAAAAGCAGAACAAGAAGGTCCAGGTCAAGACCTCGTCTCCGTTCTCA
TAGTCGTAGCAGTGAAAGGTCCAGTCACAGAAGAACGCGTAGTCGGTCTCGGGATAGAGAACGACGTAAG
GGCAGAGATAAAGAGAAAAGAGAAAAGGAGAAGGATAAAGGGAAGGACAAGGAATTACATAACATCAAAC
GTGGGGAATCTGGAAACATCAAAGCTGGATTAGAACATCTGCCACCAGCTGAACAGGCCAAAGCCAGACT
ACAGCTGGTTCTTGAAGCTGCTGCAAAAGCTGATGAAGCATTGAAAGCCAAAGAAAGAAATGAGGAAGAA
GCAAAGAGAAGAAAGGAGGAAGACCAAGCCACCCTGGTAGAACAAGTAAAAAGAGTAAAAGAAATTGAAG
CTATTGAAAGTGATTCTTTTGTTCAGCAGACATTCAGATCAAGTAAAGAAGTCAAAAAGTCAGTGGAACC
TAGTGAAGTGAAACAAGCAACTTCAACATCAGGACCAGCATCAGCAGTTGCTGATCCACCCAGTACTGAA
AAAGAAATAGATCCTACCAGCATCCCTACTGCTATCAAGTACCAAGATGACAATTCCCTGGCCCATCCAA
ATTTATTTATCGAGAAAGCTGATGCTGAGGAAAAATGGTTCAAGAGATTAATTGCTCTCCGACAAGAAAG
ACTAATGGGCAGTCCTGTGGCCTAA

Translation (334 aa):
MGRRSSDTEEESRSKRKKKHRRRSSSSSSSDSRTYSRKKGGRKSRSKSRSWSRDLQPRSHSYDRRRRHRS
SSSSSYGSRRKRSRSRSRGRGKSYRVQRSRSKSRTRRSRSRPRLRSHSRSSERSSHRRTRSRSRDRERRK
GRDKEKREKEKDKGKDKELHNIKRGESGNIKAGLEHLPPAEQAKARLQLVLEAAAKADEALKAKERNEEE
AKRRKEEDQATLVEQVKRVKEIEAIESDSFVQQTFRSSKEVKKSVEPSEVKQATSTSGPASAVADPPSTE
KEIDPTSIPTAIKYQDDNSLAHPNLFIEKADAEEKWFKRLIALRQERLMGSPVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH