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Report for CCDS31794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31794.1 Public Homo sapiens 12 SPATS2 24 110 108 CCDS HistoryNCBI Gene:65244Re-query CCDS DB by CCDS ID:31794.1Re-query CCDS DB by GeneID:65244See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31794.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321898.10 ENSP00000326841.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000321898.10Link to Ensembl Protein Viewer:ENSP00000326841.6Re-query CCDS DB by Nucleotide ID:ENST00000321898Re-query CCDS DB by Protein ID:ENSP00000326841
Original member Current member EBI ENST00000552918.6 ENSP00000447947.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000552918.6Link to Ensembl Protein Viewer:ENSP00000447947.2Re-query CCDS DB by Nucleotide ID:ENST00000552918Re-query CCDS DB by Protein ID:ENSP00000447947
Original member Current member EBI ENST00000553127.5 ENSP00000448228.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000553127.5Link to Ensembl Protein Viewer:ENSP00000448228.1Re-query CCDS DB by Nucleotide ID:ENST00000553127Re-query CCDS DB by Protein ID:ENSP00000448228
Original member Current member NCBI NM_001293285.2 NP_001280214.1 Accepted alive Link to Nucleotide Sequence:NM_001293285.2Link to Protein Sequence:NP_001280214.1Re-query CCDS DB by Nucleotide ID:NM_001293285Re-query CCDS DB by Protein ID:NP_001280214Link to BLAST:NP_001280214.1
Original member Current member NCBI NM_001293286.2 NP_001280215.1 Accepted alive Link to Nucleotide Sequence:NM_001293286.2Link to Protein Sequence:NP_001280215.1Re-query CCDS DB by Nucleotide ID:NM_001293286Re-query CCDS DB by Protein ID:NP_001280215Link to BLAST:NP_001280215.1
Original member Current member NCBI NM_023071.4 NP_075559.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_023071.4Link to Protein Sequence:NP_075559.2Re-query CCDS DB by Nucleotide ID:NM_023071Re-query CCDS DB by Protein ID:NP_075559Link to BLAST:NP_075559.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280214.1 545 Q86XZ4 545 100% 0 0
NP_001280215.1 545 Q86XZ4 545 100% 0 0
NP_075559.2 545 Q86XZ4 545 100% 0 0

Chromosomal Locations for CCDS 31794.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 49461013 49461037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49484590 49484669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49489465 49489573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49490682 49490731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49494741 49495002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49496833 49497009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49500070 49500205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49514555 49514613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49519073 49519182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49522751 49522853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49524682 49524896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49525944 49526255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGTCCAGGAAACAGAACCAGAAGGATTCATCAGGATTCATTTTTGATTTGCAGTCCAATACCGTACTGG
CCCAGGGAGGAGCTTTTGAGAACATGAAAGAGAAGATAAATGCGGTACGTGCAATAGTTCCTAATAAGAG
CAACAATGAAATTATCCTGGTTTTGCAGCACTTTGATAACTGTGTGGACAAAACAGTACAAGCATTCATG
GAAGGTAGTGCCAGTGAAGTACTCAAAGAATGGACAGTAACAGGCAAGAAAAAGAACAAAAAGAAGAAAA
ACAAACCGAAACCTGCCGCAGAACCAAGTAACGGCATCCCAGATTCCAGTAAATCAGTTTCCATTCAAGA
GGAACAGTCTGCGCCTTCCTCAGAGAAAGGTGGTATGAATGGCTACCATGTCAATGGTGCCATCAATGAC
ACTGAGTCTGTGGACTCACTCAGTGAAGGTTTGGAGACACTTTCAATAGATGCCAGAGAATTGGAGGATC
CCGAGTCTGCCATGCTAGATACGCTGGATAGAACAGGATCCATGCTGCAGAATGGTGTCTCTGATTTTGA
GACCAAGTCTTTGACTATGCACTCTATTCACAATTCTCAACAACCCAGGAATGCTGCCAAATCTCTCTCA
AGACCTACCACAGAAACTCAGTTTTCAAATATGGGGATGGAAGATGTTCCCCTCGCCACCAGTAAAAAGC
TAAGTTCCAATATTGAAAAATCTGTAAAAGACCTCCAGCGCTGCACAGTGTCTCTTGCACGGTATCGAGT
TGTAGTTAAAGAAGAGATGGATGCCTCCATTAAGAAAATGAAACAAGCCTTTGCTGAATTGGAGAGCTGT
TTAATGGATCGAGAAGTGGCGTTGCTTGCTGAAATGGACAAAGTGAAAGCTGAAGCAATGGAAATTTTGC
TCAGCCGACAAAAGAAGGCTGAACTTCTAAAGAAGATGACTCATGTGGCTGTTCAAATGTCAGAGCAGCA
ATTGGTTGAGCTCAGAGCTGATATCAAGCACTTTGTTAGTGAACGTAAATATGATGAGGATCTGGGACGA
GTAGCCCGGTTCACCTGTGATGTAGAGACCCTAAAGAAGAGCATTGATTCATTTGGACAAGTGTCTCATC
CAAAGAACAGCTATTCGACCAGATCCCGATGTAGCTCAGTTACATCTGTGTCCTTGAGTAGCCCAAGTGA
TGCCTCTGCTGCTTCCTCTTCCACCTGTGCCTCTCCTCCCAGCCTTACAAGTGCTAACAAGAAAAACTTT
GCACCGGGAGAGACTCCTGCAGCCATAGCAAACTCCAGTGGCCAGCCCTACCAGCCACTTCGGGAGGTAT
TGCCAGGGAACAGACGAGGAGGACAGGGCTATAGGCCACAAGGCCAAAAGTCCAATGACCCCATGAACCA
AGGGCGGCATGACAGTATGGGTCGTTACAGAAACAGCTCGTGGTATTCATCTGGTTCCAGGTATCAGAGT
GCTCCATCTCAGGCACCAGGAAACACCATTGAAAGAGGCCAGACTCACTCTGCAGGGACCAATGGAACTG
GAGTCAGCATGGAGCCCAGCCCTCCCACGCCTTCATTCAAAAAGGGGCTCCCCCAGCGCAAACCCAGGAC
CTCTCAGACTGAAGCCGTGAACTCTTGA

Translation (545 aa):
MSRKQNQKDSSGFIFDLQSNTVLAQGGAFENMKEKINAVRAIVPNKSNNEIILVLQHFDNCVDKTVQAFM
EGSASEVLKEWTVTGKKKNKKKKNKPKPAAEPSNGIPDSSKSVSIQEEQSAPSSEKGGMNGYHVNGAIND
TESVDSLSEGLETLSIDARELEDPESAMLDTLDRTGSMLQNGVSDFETKSLTMHSIHNSQQPRNAAKSLS
RPTTETQFSNMGMEDVPLATSKKLSSNIEKSVKDLQRCTVSLARYRVVVKEEMDASIKKMKQAFAELESC
LMDREVALLAEMDKVKAEAMEILLSRQKKAELLKKMTHVAVQMSEQQLVELRADIKHFVSERKYDEDLGR
VARFTCDVETLKKSIDSFGQVSHPKNSYSTRSRCSSVTSVSLSSPSDASAASSSTCASPPSLTSANKKNF
APGETPAAIANSSGQPYQPLREVLPGNRRGGQGYRPQGQKSNDPMNQGRHDSMGRYRNSSWYSSGSRYQS
APSQAPGNTIERGQTHSAGTNGTGVSMEPSPPTPSFKKGLPQRKPRTSQTEAVNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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