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Report for CCDS3171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3171.1 Public Homo sapiens 3 DHX36 24 110 108 CCDS HistoryNCBI Gene:170506Re-query CCDS DB by CCDS ID:3171.1Re-query CCDS DB by GeneID:170506See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3171.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000496811.6 ENSP00000417078.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000496811.6Link to Ensembl Protein Viewer:ENSP00000417078.1Re-query CCDS DB by Nucleotide ID:ENST00000496811Re-query CCDS DB by Protein ID:ENSP00000417078
Original member Current member NCBI NM_020865.3 NP_065916.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020865.3Link to Protein Sequence:NP_065916.2Re-query CCDS DB by Nucleotide ID:NM_020865Re-query CCDS DB by Protein ID:NP_065916Link to BLAST:NP_065916.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065916.2 1008 Q9H2U1-1 1008 100% 0 0

Chromosomal Locations for CCDS 3171.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 154276171 154276356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154276747 154276899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154277598 154277718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154280579 154280669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154280763 154280862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154283188 154283271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154284583 154284669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154284814 154284987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154288866 154288964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154289709 154289826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154292551 154292694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154293748 154293812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154295284 154295339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154299838 154299925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154300594 154300696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154300987 154301127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154303329 154303410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154304806 154304972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154305094 154305168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154306216 154306295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154309653 154309823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154311636 154311674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154315046 154315280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154316039 154316163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154324174 154324416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3027 nt):
ATGAGTTATGACTACCATCAGAACTGGGGCCGTGATGGGGGTCCCCGCAGCTCCGGTGGGGGCTATGGAG
GGGGGCCAGCAGGGGGTCATGGAGGTAACCGAGGCTCCGGAGGAGGCGGCGGCGGCGGAGGGGGTGGTCG
AGGCGGCAGGGGCCGGCATCCCGGGCACCTGAAAGGCCGCGAAATCGGCATGTGGTACGCGAAAAAACAG
GGGCAGAAGAACAAGGAAGCGGAGAGGCAAGAGAGAGCTGTAGTACACATGGATGAACGACGAGAAGAAC
AAATTGTACAGTTACTGAATTCTGTTCAAGCGAAGAATGATAAAGAGTCAGAAGCACAGATATCCTGGTT
TGCTCCTGAGGATCATGGATACGGTACTGAAGTTTCTACTAAGAACACACCATGCTCAGAGAACAAACTT
GACATCCAGGAAAAGAAGTTGATAAATCAAGAAAAAAAAATGTTTAGAATCAGGAACAGATCATATATTG
ACCGAGATTCTGAGTATCTCTTGCAAGAAAATGAACCAGATGGAACTTTAGACCAAAAATTATTGGAAGA
TTTACAAAAGAAAAAAAATGACCTTCGGTATATTGAAATGCAGCATTTCAGAGAAAAGCTGCCTTCGTAT
GGAATGCAAAAGGAATTGGTAAATTTAATTGATAACCATCAGGTAACAGTAATAAGTGGTGAAACTGGTT
GTGGCAAAACCACTCAAGTTACTCAGTTCATTTTGGATAACTACATTGAAAGAGGAAAAGGATCTGCTTG
CAGAATAGTTTGTACTCAGCCAAGAAGAATTAGTGCCATTTCAGTTGCGGAAAGAGTAGCTGCAGAAAGG
GCAGAATCTTGTGGCAGTGGTAATAGTACTGGATATCAAATTCGTCTCCAGAGTCGGTTGCCAAGGAAAC
AGGGTTCTATCTTATACTGTACAACAGGAATCATCCTTCAGTGGCTCCAGTCAGACCCGTATTTGTCCAG
TGTTAGTCATATCGTACTTGATGAAATCCATGAAAGAAATCTGCAGTCAGATGTTTTAATGACTGTTGTT
AAAGACCTTCTCAATTTTCGATCTGACTTGAAAGTAATATTGATGAGTGCAACATTGAATGCAGAAAAGT
TTTCAGAATATTTTGGTAACTGTCCAATGATACATATACCTGGTTTTACCTTTCCGGTTGTGGAATATCT
TTTGGAAGATGTAATTGAAAAAATAAGGTATGTTCCAGAACAAAAAGAACACAGATCCCAGTTTAAGAGG
GGTTTCATGCAAGGGCATGTAAATAGACAAGAAAAAGAAGAAAAAGAAGCAATATATAAAGAACGTTGGC
CAGATTATGTAAGGGAACTGCGAAGAAGGTATTCTGCAAGTACTGTAGATGTTATAGAAATGATGGAGGA
TGATAAAGTTGATCTGAATTTGATTGTTGCCCTCATCCGATACATTGTTTTGGAAGAAGAGGATGGTGCG
ATACTGGTCTTTCTGCCAGGCTGGGACAATATCAGCACTTTACATGATCTCTTGATGTCACAAGTAATGT
TTAAATCAGATAAATTTTTAATTATACCTTTACATTCACTGATGCCTACAGTTAACCAGACACAGGTGTT
TAAAAGAACCCCTCCTGGTGTTCGGAAAATAGTAATTGCTACCAACATTGCGGAGACTAGCATTACCATA
GATGATGTCGTTTATGTGATAGATGGAGGAAAAATAAAAGAGACGCATTTTGATACTCAGAACAATATCA
GTACAATGTCCGCTGAGTGGGTTAGTAAAGCTAATGCCAAACAGAGAAAAGGTCGAGCTGGAAGAGTTCA
ACCTGGTCATTGCTATCATCTGTATAATGGTCTTAGAGCAAGTCTTCTAGATGACTATCAACTGCCAGAA
ATTTTGAGAACTCCTTTGGAAGAACTTTGTTTACAAATAAAGATTTTAAGGCTAGGTGGAATTGCTTATT
TTCTGAGTAGATTAATGGACCCACCATCAAATGAGGCAGTGTTACTCTCCATAAGACACCTGATGGAGCT
GAACGCTTTGGATAAACAAGAAGAATTGACACCTCTTGGAGTCCACTTGGCACGATTACCCGTTGAGCCA
CATATTGGAAAAATGATTCTTTTTGGAGCACTGTTCTGCTGCTTAGACCCAGTACTCACTATTGCTGCTA
GTCTCAGTTTCAAAGATCCATTTGTCATTCCACTGGGAAAAGAAAAGATTGCAGATGCAAGAAGAAAGGA
ATTGGCAAAGGATACTAGAAGTGATCACTTAACAGTTGTGAATGCGTTTGAGGGCTGGGAAGAGGCTAGG
CGACGTGGTTTCAGATACGAAAAGGACTATTGCTGGGAATATTTTCTGTCTTCAAACACACTGCAGATGC
TGCATAACATGAAAGGACAGTTTGCTGAGCATCTTCTTGGAGCTGGATTTGTAAGCAGTAGAAATCCTAA
AGATCCAGAATCTAATATAAATTCAGATAATGAGAAGATAATTAAAGCTGTCATCTGTGCTGGTTTATAT
CCCAAAGTTGCTAAAATTCGACTAAATTTGGGTAAAAAAAGAAAAATGGTAAAAGTTTACACAAAAACCG
ATGGCCTGGTTGCTGTTCATCCTAAATCTGTTAATGTGGAGCAAACAGACTTTCACTACAACTGGCTTAT
CTATCACCTAAAGATGAGAACAAGCAGTATATACTTGTATGACTGCACAGAGGTTTCCCCATACTGTCTC
TTGTTTTTTGGAGGTGACATTTCCATCCAGAAGGATAACGATCAGGAAACTATTGCTGTAGATGAGTGGA
TTGTATTTCAGTCTCCAGCAAGAATTGCCCATCTTGTTAAGGAATTAAGAAAGGAACTAGATATTCTTCT
GCAAGAGAAGATTGAAAGTCCTCATCCTGTAGACTGGAATGACACTAAATCCAGAGACTGTGCAGTACTG
TCAGCTATTATAGACTTGATCAAAACACAGGAAAAGGCAACTCCCAGGAACTTTCCGCCACGATTCCAGG
ATGGATATTACAGCTGA

Translation (1008 aa):
MSYDYHQNWGRDGGPRSSGGGYGGGPAGGHGGNRGSGGGGGGGGGGRGGRGRHPGHLKGREIGMWYAKKQ
GQKNKEAERQERAVVHMDERREEQIVQLLNSVQAKNDKESEAQISWFAPEDHGYGTEVSTKNTPCSENKL
DIQEKKLINQEKKMFRIRNRSYIDRDSEYLLQENEPDGTLDQKLLEDLQKKKNDLRYIEMQHFREKLPSY
GMQKELVNLIDNHQVTVISGETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVAAER
AESCGSGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDPYLSSVSHIVLDEIHERNLQSDVLMTVV
KDLLNFRSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDVIEKIRYVPEQKEHRSQFKR
GFMQGHVNRQEKEEKEAIYKERWPDYVRELRRRYSASTVDVIEMMEDDKVDLNLIVALIRYIVLEEEDGA
ILVFLPGWDNISTLHDLLMSQVMFKSDKFLIIPLHSLMPTVNQTQVFKRTPPGVRKIVIATNIAETSITI
DDVVYVIDGGKIKETHFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRASLLDDYQLPE
ILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEAVLLSIRHLMELNALDKQEELTPLGVHLARLPVEP
HIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKDTRSDHLTVVNAFEGWEEAR
RRGFRYEKDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRNPKDPESNINSDNEKIIKAVICAGLY
PKVAKIRLNLGKKRKMVKVYTKTDGLVAVHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCL
LFFGGDISIQKDNDQETIAVDEWIVFQSPARIAHLVKELRKELDILLQEKIESPHPVDWNDTKSRDCAVL
SAIIDLIKTQEKATPRNFPPRFQDGYYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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