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Report for CCDS31541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31541.1 Public Homo sapiens 11 OR6Q1 24 110 108 CCDS HistoryNCBI Gene:219952Re-query CCDS DB by CCDS ID:31541.1Re-query CCDS DB by GeneID:219952See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 31541.1
This olfactory receptor gene is a segregating pseudogene (PMID:22908908), where some individuals have an allele that encodes a functional olfactory receptor, while other individuals have an allele that is predicted to be non-functional. This CCDS is being retained because the Classifier for Olfactory Receptor Pseudogenes (CORP) predicts the reference genome allele to be functional.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 31541.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302622.4 ENSP00000307734.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302622.4Link to Ensembl Protein Viewer:ENSP00000307734.3Re-query CCDS DB by Nucleotide ID:ENST00000302622Re-query CCDS DB by Protein ID:ENSP00000307734
Original member Current member NCBI NM_001005186.2 NP_001005186.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005186.2Link to Protein Sequence:NP_001005186.2Re-query CCDS DB by Nucleotide ID:NM_001005186Re-query CCDS DB by Protein ID:NP_001005186Link to BLAST:NP_001005186.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005186.2 317 Q8NGQ2 317 100% 0 0

Chromosomal Locations for CCDS 31541.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58030953 58031906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGCAACCATATACCAAAAACTGGACCCAGGTAACTGAATTTGTCATGATGGGCTTTGCTGGCATCCATG
AAGCACACCTCCTCTTCTTCATACTCTTCCTCACCATGTACCTGTTCACCTTGGTGGAGAATTTGGCCAT
CATTTTAGTGGTGGGTTTGGACCACCGACTACGGAGACCCATGTATTTCTTCCTGACACACTTGTCCTGC
CTTGAAATCTGGTACACTTCTGTTACAGTGCCCAAGATGCTGGCTGGTTTTATTGGGGTGGATGGTGGCA
AGAATATCTCTTATGCTGATTGCCTATCCCAGCTCTTCATCTTCACCTTTCTTGGGGCAACTGAGTGTTT
CCTACTGGCTGCCATGGCCTATGATCGTTATGTGGCCATTTGTATGCCTCTCCACTATGGGGCTTTTGTG
TCCTGGGGCACCTGCATCCGTCTGGCAGCTGCCTGTTGGCTGGTAGGTTTCCTCACACCCATCTTGCCAA
TCTACCTCTTGTCTCAGCTAACATTTTATGGCCCAAATGTCATTGACCATTTCTCCTGTGATGCCTCACC
CTTGCTAGCCTTGTCGTGCTCAGATGTCACTTGGAAGGAGACTGTGGATTTCCTGGTGTCTCTGGCTGTG
CTACTGGCCTCCTCTATGGTCATTGCTGTGTCCTATGGCAACATCGTCTGGACACTGCTGCACATCCGCT
CAGCTGCTGAGCGCTGGAAGGCCTTCTCTACCTGTGCAGCTCACCTGACTGTGGTGAGCCTCTTCTATGG
CACTCTTTTCTTTATGTATGTCCAGACCAAGGTGACCTCCTCCATCAACTTCAACAAGGTGGTATCTGTC
TTCTACTCTGTTGTCACGCCCATGCTCAATCCTCTCATCTACAGTCTTAGGAACAAGGAAGTGAAGGGAG
CTCTGGGTCGAGTCTTTTCTCTCAACTTTTGGAAGGGACAGTGA

Translation (317 aa):
MQPYTKNWTQVTEFVMMGFAGIHEAHLLFFILFLTMYLFTLVENLAIILVVGLDHRLRRPMYFFLTHLSC
LEIWYTSVTVPKMLAGFIGVDGGKNISYADCLSQLFIFTFLGATECFLLAAMAYDRYVAICMPLHYGAFV
SWGTCIRLAAACWLVGFLTPILPIYLLSQLTFYGPNVIDHFSCDASPLLALSCSDVTWKETVDFLVSLAV
LLASSMVIAVSYGNIVWTLLHIRSAAERWKAFSTCAAHLTVVSLFYGTLFFMYVQTKVTSSINFNKVVSV
FYSVVTPMLNPLIYSLRNKEVKGALGRVFSLNFWKGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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