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Report for CCDS3146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3146.1 Public Homo sapiens 3 RNF13 24 110 108 CCDS HistoryNCBI Gene:11342Re-query CCDS DB by CCDS ID:3146.1Re-query CCDS DB by GeneID:11342See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3146.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344229.7 ENSP00000341361.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344229.7Link to Ensembl Protein Viewer:ENSP00000341361.3Re-query CCDS DB by Nucleotide ID:ENST00000344229Re-query CCDS DB by Protein ID:ENSP00000341361
Original member Current member EBI ENST00000392894.8 ENSP00000376628.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392894.8Link to Ensembl Protein Viewer:ENSP00000376628.3Re-query CCDS DB by Nucleotide ID:ENST00000392894Re-query CCDS DB by Protein ID:ENSP00000376628
Original member Current member NCBI NM_001378285.1 NP_001365214.1 Accepted alive Link to Nucleotide Sequence:NM_001378285.1Link to Protein Sequence:NP_001365214.1Re-query CCDS DB by Nucleotide ID:NM_001378285Re-query CCDS DB by Protein ID:NP_001365214Link to BLAST:NP_001365214.1
Original member Current member NCBI NM_001378286.1 NP_001365215.1 Accepted alive Link to Nucleotide Sequence:NM_001378286.1Link to Protein Sequence:NP_001365215.1Re-query CCDS DB by Nucleotide ID:NM_001378286Re-query CCDS DB by Protein ID:NP_001365215Link to BLAST:NP_001365215.1
Original member Current member NCBI NM_007282.4 NP_009213.1 Accepted alive Link to Nucleotide Sequence:NM_007282.4Link to Protein Sequence:NP_009213.1Re-query CCDS DB by Nucleotide ID:NM_007282Re-query CCDS DB by Protein ID:NP_009213Link to BLAST:NP_009213.1
Original member Current member NCBI NM_183381.3 NP_899237.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_183381.3Link to Protein Sequence:NP_899237.1Re-query CCDS DB by Nucleotide ID:NM_183381Re-query CCDS DB by Protein ID:NP_899237Link to BLAST:NP_899237.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365214.1 381 O43567-1 381 100% 0 0
NP_001365215.1 381 O43567-1 381 100% 0 0
NP_009213.1 381 O43567-1 381 100% 0 0
NP_899237.1 381 O43567-1 381 100% 0 0

Chromosomal Locations for CCDS 3146.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 149846027 149846140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149852516 149852596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149872029 149872154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149895473 149895560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149902072 149902162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149911978 149912083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149921134 149921227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149960056 149960136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149960740 149961104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGCTGCTCTCCATAGGGATGCTCATGCTGTCAGCCACACAAGTCTACACCATCTTGACTGTCCAGCTCT
TTGCATTCTTAAACCTACTGCCTGTAGAAGCAGACATTTTAGCATATAACTTTGAAAATGCATCTCAGAC
ATTTGATGACCTCCCTGCAAGATTTGGTTATAGACTTCCAGCTGAAGGTTTAAAGGGTTTTTTGATTAAC
TCAAAACCAGAGAATGCCTGTGAACCCATAGTGCCTCCACCAGTAAAAGACAATTCATCTGGCACTTTCA
TCGTGTTAATTAGAAGACTTGATTGTAATTTTGATATAAAGGTTTTAAATGCACAGAGAGCAGGATACAA
GGCAGCCATAGTTCACAATGTTGATTCTGATGACCTCATTAGCATGGGATCCAACGACATTGAGGTACTA
AAGAAAATTGACATTCCATCTGTCTTTATTGGTGAATCATCAGCTAATTCTCTGAAAGATGAATTCACAT
ATGAAAAAGGGGGCCACCTTATCTTAGTTCCAGAATTTAGTCTTCCTTTGGAATACTACCTAATTCCCTT
CCTTATCATAGTGGGCATCTGTCTCATCTTGATAGTCATTTTCATGATCACAAAATTTGTCCAGGATAGA
CATAGAGCTAGAAGAAACAGACTTCGTAAAGATCAACTTAAGAAACTTCCTGTACATAAATTCAAGAAAG
GAGATGAGTATGATGTATGTGCCATTTGTTTGGATGAGTATGAAGATGGAGACAAACTCAGAATCCTTCC
CTGTTCCCATGCTTATCACTGCAAGTGTGTAGACCCTTGGCTAACTAAAACCAAAAAAACCTGTCCAGTG
TGCAAGCAAAAAGTTGTTCCTTCTCAAGGCGATTCAGACTCTGACACAGACAGTAGTCAAGAAGAAAATG
AAGTGACAGAACATACCCCTTTACTGAGACCTTTAGCTTCTGTCAGTGCCCAGTCATTTGGGGCTTTATC
GGAATCCCGCTCACATCAGAACATGACAGAATCTTCAGACTATGAGGAAGACGACAATGAAGATACTGAC
AGTAGTGATGCAGAAAATGAAATTAATGAACATGATGTCGTGGTCCAGTTGCAGCCTAATGGTGAACGGG
ATTACAACATAGCAAATACTGTTTGA

Translation (381 aa):
MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLPAEGLKGFLIN
SKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVL
KKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDR
HRARRNRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV
CKQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESSDYEEDDNEDTD
SSDAENEINEHDVVVQLQPNGERDYNIANTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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