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Report for CCDS3143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3143.1 Public Homo sapiens 3 TM4SF1 24 110 108 CCDS HistoryNCBI Gene:4071Re-query CCDS DB by CCDS ID:3143.1Re-query CCDS DB by GeneID:4071See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3143.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305366.8 ENSP00000304277.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305366.8Link to Ensembl Protein Viewer:ENSP00000304277.3Re-query CCDS DB by Nucleotide ID:ENST00000305366Re-query CCDS DB by Protein ID:ENSP00000304277
Original member Current member NCBI NM_014220.3 NP_055035.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014220.3Link to Protein Sequence:NP_055035.1Re-query CCDS DB by Nucleotide ID:NM_014220Re-query CCDS DB by Protein ID:NP_055035Link to BLAST:NP_055035.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055035.1 202 P30408 202 100% 0 0

Chromosomal Locations for CCDS 3143.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 149369866 149369880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149371687 149371867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149375443 149375588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149375680 149375769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149377371 149377547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGTGCTATGGGAAGTGTGCACGATGCATCGGACATTCTCTGGTGGGGCTCGCCCTCCTGTGCATCGCGG
CTAATATTTTGCTTTACTTTCCCAATGGGGAAACAAAGTATGCCTCCGAAAACCACCTCAGCCGCTTCGT
GTGGTTCTTTTCTGGCATCGTAGGAGGTGGCCTGCTGATGCTCCTGCCAGCATTTGTCTTCATTGGGCTG
GAACAGGATGACTGCTGTGGCTGCTGTGGCCATGAAAACTGTGGCAAACGATGTGCGATGCTTTCTTCTG
TATTGGCTGCTCTCATTGGAATTGCAGGATCTGGCTACTGTGTCATTGTGGCAGCCCTTGGCTTAGCAGA
AGGACCACTATGTCTTGATTCCCTCGGCCAGTGGAACTACACCTTTGCCAGCACTGAGGGCCAGTACCTT
CTGGATACCTCCACATGGTCCGAGTGCACTGAACCCAAGCACATTGTGGAATGGAATGTATCTCTGTTTT
CTATCCTCTTGGCTCTTGGTGGAATTGAATTCATCTTGTGTCTTATTCAAGTAATAAATGGAGTGCTTGG
AGGCATATGTGGCTTTTGCTGCTCTCACCAACAGCAATATGACTGCTAA

Translation (202 aa):
MCYGKCARCIGHSLVGLALLCIAANILLYFPNGETKYASENHLSRFVWFFSGIVGGGLLMLLPAFVFIGL
EQDDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPLCLDSLGQWNYTFASTEGQYL
LDTSTWSECTEPKHIVEWNVSLFSILLALGGIEFILCLIQVINGVLGGICGFCCSHQQQYDC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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