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Report for CCDS3140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3140.1 Public Homo sapiens 3 HPS3 24 110 108 CCDS HistoryNCBI Gene:84343Re-query CCDS DB by CCDS ID:3140.1Re-query CCDS DB by GeneID:84343See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3140.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296051.7 ENSP00000296051.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296051.7Link to Ensembl Protein Viewer:ENSP00000296051.2Re-query CCDS DB by Nucleotide ID:ENST00000296051Re-query CCDS DB by Protein ID:ENSP00000296051
Original member Current member NCBI NM_032383.5 NP_115759.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032383.5Link to Protein Sequence:NP_115759.2Re-query CCDS DB by Nucleotide ID:NM_032383Re-query CCDS DB by Protein ID:NP_115759Link to BLAST:NP_115759.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115759.2 1004 Q969F9-1 1004 100% 0 0

Chromosomal Locations for CCDS 3140.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 149129724 149129940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149140004 149140498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149141017 149141188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149141295 149141380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149145354 149145546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149150599 149150680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149153494 149153648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149155107 149155215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149157350 149157531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149158666 149158846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149160046 149160279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149162148 149162333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149162690 149162878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149163842 149163949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149167034 149167240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149167893 149167983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149172095 149172222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3015 nt):
ATGGTGCAGCTGTACAACCTGCACCCGTTCGGGTCGCAGCAGGTGGTGCCCTGCAAGCTGGAGCCGGACC
GGTTCTGTGGCGGGGGGCGTGACGCGCTTTTCGTGGCGGCGGGCTGCAAGGTGGAGGCGTTCGCGGTGGC
CGGCCAGGAGCTGTGCCAGCCGCGGTGCGCCTTCTCCACGCTGGGCCGGGTGTTGCGCCTGGCCTACAGC
GAGGCTGGAGATTATTTGGTAGCAATTGAAGAGAAAAACAAAGCTACATTTCTACGTGCTTATGTGAACT
GGAGAAATAAAAGGACTGAAAACTCTCGTGTGTGTATCCGAATGATTGGGCATAATGTGGAGGGACCATT
CAGCAAAGCCTTCAGAGACCAGATGTACATTATTGAAATGCCGCTTTCGGAGGCCCCCTTGTGCATTTCC
TGTTGCCCTGTGAAAGGAGACCTTCTCGTTGGCTGCACAAATAAATTAGTCTTATTTAGTTTGAAGTACC
AGATCATTAATGAGGAATTCTCACTATTGGACTTTGAACGTTCTTTAATTATACACATAGATAATATCAC
TCCTGTTGAGGTTTCTTTTTGTGTTGGATATGTTGCTGTCATGTCAGACTTAGAAGTCTTAATCGTAAAA
CTGGAGTCAGGCCCTAAAAATGGAGAGAGAGTTCACCACCATCCACATAAGACCAACAATCGAATAAGAC
GGACAGAAGAAGGCATCAGTAATGAAATTTCACAGCTTGAGTCAGATGATTTTGTCATCTGCCAGAAGCC
CCTGGAACTTCTTGGTGAAAAAAGTGAACAGTCTGGATTATCTGTTACACTGGAGTCTACGGGATTAGCT
GATGAAAAAAGAAAATATTCCCACTTTCAGCACCTGCTCTATAGACGTTTTGCTCCTGATATTTCGTCCT
ATGTCTTGTCTGATGACATCAAGCTACATTCCCTCCAGCTGCTACCCATTTACCAGACCGGTTCTCTTAC
ATCTGATGGAAAAAATTTGTCTCAGGAAAAAGAATTGCTGAGTCTCTTTTGCTTTTTCTCCTTACCTCAT
GTGGGCTATCTCTACATGGTTGTCAAATCTGTTGAATTGATGTCAGTCTACCAGTATCCTGAAAAGTCTC
AGCAGGCAGTACTCACGCCACAATTTTTGCACGTCATTACAAGTAACAACCTGCAGTGTTTCACTGTGCG
GTGCAGTGCGGCGGCAGCTCGTGAGGAGGACCCGTACATGGACACCACCCTGAAGGCTTGCCCACCTGTC
AGTATGGATGTCTGTGCTTTAAGAATACAGCTTTTCATAGGCTTGAAAGCCATCTGTCACTTTAAAAACC
ACATCATACTTTTGACTAAAGCAGAACCTGAAGCCATTCCAGAGAGAAGACAGTCACCCAAGAGGCTTCT
TTCGAGAAAAGATACCAGTGTTAAAATCAAAATACCTCCTGTAGCTGAGGCTGGGTGGAATTTGTATATT
GTGAATACGATCTCACCAGTGCAGCTGTACAAAGAGATGGTAGACTATAGCAATACCTATAAGACTGTCA
AAACCCAGAGCTGCATTCACCTTCTCAGTGAGGCTCATCTGTTAGTGCGAGCTGCCCTGATGGATGCCAG
TCAGCTGGAACCTGGAGAGAAGGCAGAGCTTTTGGAAGCATTTAAGGAAAGCTGTGGGCACCTTGGGGAC
TGTTACAGCAGGCTTGACTCCCAGCATTCTCATCTCACCTTGCCATACTATAAGATGTCTGGTTTGTCTA
TGGCTGAAGTTCTGGCCCGCACGGACTGGACAGTAGAGGATGGATTACAGAAATACGAGAGAGGATTAAT
CTTTTACATTAATCATTCACTTTATGAAAACCTGGATGAAGAATTAAATGAAGAATTAGCAGCAAAAGTG
GTTCAGATGTTTTATGTGGCTGAGCCAAAGCAAGTGCCCCATATTCTCTGTAGTCCTTCTATGAAGAATA
TTAATCCTTTAACTGCCATGAGCTATCTAAGGAAGCTGGATACTTCTGGGTTTTCATCGATCTTAGTGAC
ATTGACCAAGGCAGCAGTGGCTCTGAAAATGGGAGATCTTGACATGCACAGAAATGAAATGAAAAGCCAT
TCAGAGATGAAGTTGGTATGTGGCTTCATTCTGGAACCTCGGCTGTTGATTCAACAGAGAAAGGGACAGA
TTGTTCCAACCGAGCTTGCACTTCACTTGAAGGAAACTCAGCCTGGATTGCTTGTGGCTTCAGTTCTGGG
CTTGCAGAAGAACAACAAAATTGGAATTGAAGAAGCAGATTCCTTTTTTAAGGTGCTTTGTGCTAAGGAT
GAAGATACAATTCCTCAGCTCTTGGTAGACTTTTGGGAAGCTCAGCTAGTGGCATGTCTCCCAGATGTGG
TACTTCAGGAACTCTTTTTCAAACTCACATCACAGTACATCTGGAGATTGTCTAAGAGGCAGCCTCCTGA
CACCACACCATTGCGAACATCGGAGGATCTGATAAATGCCTGTAGTCATTATGGCTTAATTTATCCATGG
GTTCACGTCGTAATATCATCTGATTCTTTAGCTGATAAAAATTATACAGAAGATCTTTCAAAATTACAGT
CTCTTATATGTGGTCCTTCATTTGACATAGCTTCCATTATTCCGTTCTTGGAGCCACTTTCAGAAGACAC
TATTGCCGGCCTCAGTGTCCATGTTCTGTGTCGTACACGCTTGAAAGAGTATGAACAGTGCATAGACATA
CTGTTAGAGAGATGCCCGGAGGCAGTCATTCCATATGCTAATCATGAACTGAAAGAAGAGAACCGGACTC
TGTGGTGGAAAAAACTGTTGCCTGAACTTTGTCAGAGAATAAAATGTGGTGGAGAGAAGTATCAACTCTA
CCTGTCATCATTAAAAGAAACATTGTCAATTGTTGCTGTGGAACTAGAACTGAAGGATTTCATGAATGTT
CTCCCAGAAGATGGTACTGCAACATTTTTCTTGCCATATCTTCTCTATTGCAGTCGAAAGAAACCATTGA
CTTAA

Translation (1004 aa):
MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFSTLGRVLRLAYS
EAGDYLVAIEEKNKATFLRAYVNWRNKRTENSRVCIRMIGHNVEGPFSKAFRDQMYIIEMPLSEAPLCIS
CCPVKGDLLVGCTNKLVLFSLKYQIINEEFSLLDFERSLIIHIDNITPVEVSFCVGYVAVMSDLEVLIVK
LESGPKNGERVHHHPHKTNNRIRRTEEGISNEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLA
DEKRKYSHFQHLLYRRFAPDISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPH
VGYLYMVVKSVELMSVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPV
SMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPPVAEAGWNLYI
VNTISPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQLEPGEKAELLEAFKESCGHLGD
CYSRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQKYERGLIFYINHSLYENLDEELNEELAAKV
VQMFYVAEPKQVPHILCSPSMKNINPLTAMSYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSH
SEMKLVCGFILEPRLLIQQRKGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKD
EDTIPQLLVDFWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPW
VHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTRLKEYEQCIDI
LLERCPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNV
LPEDGTATFFLPYLLYCSRKKPLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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