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Report for CCDS31240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31240.1 Public Homo sapiens 10 LIPJ 24 110 108 CCDS HistoryNCBI Gene:142910Re-query CCDS DB by CCDS ID:31240.1Re-query CCDS DB by GeneID:142910See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31240.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371939.7 ENSP00000361007.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371939.7Link to Ensembl Protein Viewer:ENSP00000361007.3Re-query CCDS DB by Nucleotide ID:ENST00000371939Re-query CCDS DB by Protein ID:ENSP00000361007
Original member Current member NCBI NM_001010939.3 NP_001010939.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010939.3Link to Protein Sequence:NP_001010939.2Re-query CCDS DB by Nucleotide ID:NM_001010939Re-query CCDS DB by Protein ID:NP_001010939Link to BLAST:NP_001010939.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010939.2 366 Q5W064 366 100% 0 0

Chromosomal Locations for CCDS 31240.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88590688 88590696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88591378 88591498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88593946 88594144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88594667 88594776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88596280 88596416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88596790 88596936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88602576 88602647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88605633 88605704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88606674 88606907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGAATATTAGCCAGATTATTTCCTACTGGGGCTACCCTGATGAAGAATATGATATTGTAACCGAAGATG
GTTATATCCTTGGCCTTTATAGAATTCCTTATTGGAGGACAGACAATAATAAAAATCTAGCTCAGAGGGT
TGTTGTATACTTGCAACATGGTTTGCTTACATCTGCCAGCAGCTGGATTTCCAATCTTCCCAACAATAGT
CTGGGCTTCATTCTGGCAGATGCTGGTTATGATGTGTGGATGGGAAATAGCAGAGGAAATACCTGGTCCA
GGAAACACTTGTACCTAGAAACGAGTTCCAAAGAATTCTGGGCTTTCAGTTTTGATGAGATGGCAAAATA
TGACCTTCCAGCCTCTATTGATTTCACTGTGAAGCAAACCAGACAAGAGGAAATATTTTATGTAGGCCAT
TCACAGGGTACTACTATTGGTTTCATAACATTTTCTACTATATCAAAGATAGCTGAAAGAATCAAAATAT
TTTTTGCTTTAGCACCAGTTTTTTCCACAAAGTACTTAAAAAGTCCTTTAATTAGAATGACATACAAATG
GAAGTCAATAGTCATGGCTTTTTCAGGCAACAAAGACTTCTTGCCTAAAACCTCATTTAAAAAATTCATT
GGTTCAAAGCTGTGTCCACTACAGATTTTTGATAAGATTTGCCTCAATATCTTGTTTATGATGTTTGGAT
ATGACCCAAAAAACTTAAATATGAGTCGTTTGGATGTGTATTTTTCACACAACCCAGCAGGAACATCTGT
TCAAAATATGCTTCATTGGAGTCAGCTTTTAAATTCTACTCATTTGAAAGCTTATGACTGGGGCAGTCCT
GATCTGAACTTGGTTCATTATAATCAGACAACGTCTCCATTATACAACATGACAAACATGAATGTGGCAA
CTGCAATTTGGAATGGTAAAAGTGACTTGTTGGCTGACCCTGAAGACGTTAACATTTTACATTCTGAAAT
CACAAACCACATTTATTATAAAACTATTTCTTACTACAATCATATAGACTCTTTGTTTGGATTAGATGTC
TATGATCAAGTTTACCATGAAATCATTGATATTATCCAAGACAATCTATAA

Translation (366 aa):
MNISQIISYWGYPDEEYDIVTEDGYILGLYRIPYWRTDNNKNLAQRVVVYLQHGLLTSASSWISNLPNNS
LGFILADAGYDVWMGNSRGNTWSRKHLYLETSSKEFWAFSFDEMAKYDLPASIDFTVKQTRQEEIFYVGH
SQGTTIGFITFSTISKIAERIKIFFALAPVFSTKYLKSPLIRMTYKWKSIVMAFSGNKDFLPKTSFKKFI
GSKLCPLQIFDKICLNILFMMFGYDPKNLNMSRLDVYFSHNPAGTSVQNMLHWSQLLNSTHLKAYDWGSP
DLNLVHYNQTTSPLYNMTNMNVATAIWNGKSDLLADPEDVNILHSEITNHIYYKTISYYNHIDSLFGLDV
YDQVYHEIIDIIQDNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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