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Report for CCDS31239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31239.1 Public Homo sapiens 10 RNLS 24 110 108 CCDS HistoryNCBI Gene:55328Re-query CCDS DB by CCDS ID:31239.1Re-query CCDS DB by GeneID:55328See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31239.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331772.9 ENSP00000332530.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331772.9Link to Ensembl Protein Viewer:ENSP00000332530.4Re-query CCDS DB by Nucleotide ID:ENST00000331772Re-query CCDS DB by Protein ID:ENSP00000332530
Original member Current member NCBI NM_001031709.3 NP_001026879.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001031709.3Link to Protein Sequence:NP_001026879.2Re-query CCDS DB by Nucleotide ID:NM_001031709Re-query CCDS DB by Protein ID:NP_001026879Link to BLAST:NP_001026879.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026879.2 342 Q5VYX0-1 342 100% 0 0

Chromosomal Locations for CCDS 31239.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88285354 88285506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88314466 88314641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88362552 88362725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88572903 88573061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88581567 88581709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88582202 88582307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88583073 88583190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGCGCAGGTGCTGATCGTGGGCGCCGGGATGACAGGAAGCTTGTGCGCTGCGCTGCTGAGGAGGCAGA
CGTCCGGTCCCTTGTACCTTGCTGTGTGGGACAAGGCTGAGGACTCAGGGGGAAGAATGACTACAGCCTG
CAGTCCTCATAATCCTCAGTGCACAGCTGACTTGGGTGCTCAGTACATCACCTGCACTCCTCATTATGCC
AAAAAACACCAACGTTTTTATGATGAACTGTTAGCCTATGGCGTTTTGAGGCCTCTAAGCTCGCCTATTG
AAGGAATGGTGATGAAAGAAGGAGACTGTAACTTTGTGGCACCTCAAGGAATTTCTTCAATTATTAAGCA
TTACTTGAAAGAATCAGGTGCAGAAGTCTACTTCAGACATCGTGTGACACAGATCAACCTAAGAGATGAC
AAATGGGAAGTATCCAAACAAACAGGCTCCCCTGAGCAGTTTGATCTTATTGTTCTCACAATGCCAGTTC
CTGAGATTCTGCAGCTTCAAGGTGACATCACCACCTTAATTAGTGAATGCCAAAGGCAGCAACTGGAGGC
TGTGAGCTACTCCTCTCGATATGCTCTGGGCCTCTTTTATGAAGCTGGTACGAAGATTGATGTCCCTTGG
GCTGGGCAGTACATCACCAGTAATCCCTGCATACGCTTCGTCTCCATTGATAATAAGAAGCGCAATATAG
AGTCATCAGAAATTGGGCCTTCCCTCGTGATTCACACCACTGTCCCATTTGGAGTTACATACTTGGAACA
CAGCATTGAGGATGTGCAAGAGTTAGTCTTCCAGCAGCTGGAAAACATTTTGCCGGGTTTGCCTCAGCCA
ATTGCTACCAAATGCCAAAAATGGAGACATTCACAGGTTACAAATGCTGCTGCCAACTGTCCTGGCCAAA
TGACTCTGCATCACAAACCTTTCCTTGCATGTGGAGGGGATGGATTTACTCAGTCCAACTTTGATGGCTG
CATCACTTCTGCCCTATGTGTTCTGGAAGCTTTAAAGAATTATATTTAG

Translation (342 aa):
MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAEDSGGRMTTACSPHNPQCTADLGAQYITCTPHYA
KKHQRFYDELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDD
KWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISECQRQQLEAVSYSSRYALGLFYEAGTKIDVPW
AGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEHSIEDVQELVFQQLENILPGLPQP
IATKCQKWRHSQVTNAAANCPGQMTLHHKPFLACGGDGFTQSNFDGCITSALCVLEALKNYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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