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Report for CCDS3116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3116.1 Public Homo sapiens 3 PXYLP1 24 110 108 CCDS HistoryNCBI Gene:92370Re-query CCDS DB by CCDS ID:3116.1Re-query CCDS DB by GeneID:92370See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3116.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286353.9 ENSP00000286353.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000286353.9Link to Ensembl Protein Viewer:ENSP00000286353.4Re-query CCDS DB by Nucleotide ID:ENST00000286353Re-query CCDS DB by Protein ID:ENSP00000286353
Original member Current member EBI ENST00000393010.6 ENSP00000376733.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393010.6Link to Ensembl Protein Viewer:ENSP00000376733.2Re-query CCDS DB by Nucleotide ID:ENST00000393010Re-query CCDS DB by Protein ID:ENSP00000376733
Original member Current member NCBI NM_001037172.3 NP_001032249.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001037172.3Link to Protein Sequence:NP_001032249.1Re-query CCDS DB by Nucleotide ID:NM_001037172Re-query CCDS DB by Protein ID:NP_001032249Link to BLAST:NP_001032249.1
Original member Current member NCBI NM_152282.5 NP_689495.1 Accepted alive Link to Nucleotide Sequence:NM_152282.5Link to Protein Sequence:NP_689495.1Re-query CCDS DB by Nucleotide ID:NM_152282Re-query CCDS DB by Protein ID:NP_689495Link to BLAST:NP_689495.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032249.1 480 Q8TE99-1 480 100% 0 0
NP_689495.1 480 Q8TE99-1 480 100% 0 0

Chromosomal Locations for CCDS 3116.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 141260176 141260254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141278342 141278500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141279378 141279504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141287314 141287453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141292268 141293205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGCTTTTCCGCAACCGCTTCTTGCTGCTGCTGGCCCTGGCTGCGCTGCTGGCCTTTGTGAGCCTCAGCC
TGCAGTTCTTCCACCTGATCCCGGTGTCGACTCCTAAGAATGGAATGAGTAGCAAGAGTCGAAAGAGAAT
CATGCCCGACCCTGTGACGGAGCCCCCTGTGACAGACCCCGTTTATGAAGCTCTTTTGTACTGCAACATC
CCCAGCGTGGCCGAGCGCAGCATGGAAGGTCATGCCCCGCATCATTTTAAGCTGGTCTCAGTGCATGTGT
TCATTCGCCACGGAGACAGGTACCCACTGTATGTCATTCCCAAAACAAAGCGACCAGAAATTGACTGCAC
TCTGGTGGCTAACAGGAAACCGTATCACCCAAAACTGGAAGCTTTCATTAGTCACATGTCAAAAGGATCC
GGAGCCTCTTTCGAAAGCCCCTTGAACTCCTTGCCTCTTTACCCAAATCACCCATTGTGTGAGATGGGAG
AGCTCACACAGACAGGAGTTGTGCAGCATTTGCAGAACGGTCAGCTGCTGAGGGATATCTATCTAAAGAA
ACACAAACTCCTGCCCAATGATTGGTCTGCAGACCAGCTCTATTTAGAGACCACTGGGAAAAGCCGGACC
CTACAAAGTGGGCTGGCCTTGCTTTATGGCTTTCTCCCAGATTTTGACTGGAAGAAGATTTATTTCAGGC
ACCAGCCAAGTGCGCTGTTCTGCTCTGGAAGCTGCTATTGCCCGGTAAGAAACCAGTATCTGGAAAAGGA
GCAGCGTCGTCAGTACCTCCTACGTTTGAAAAACAGCCAGCTGGAGAAGACCTACGGGGAGATGGCCAAG
ATCGTGGATGTCCCCACCAAGCAGCTTAGAGCTGCCAACCCCATAGACTCCATGCTCTGCCACTTCTGCC
ACAATGTCAGCTTTCCCTGTACCAGAAATGGCTGTGTTGACATGGAGCACTTCAAGGTAATTAAGACCCA
TCAGATCGAGGATGAAAGGGAAAGACGGGAGAAGAAATTGTACTTCGGGTATTCTCTCCTGGGTGCCCAC
CCCATCCTGAACCAAACCATCGGCCGGATGCAGCGTGCCACCGAGGGCAGGAAAGAAGAGCTCTTTGCCC
TCTACTCTGCTCATGATGTCACTCTGTCACCAGTTCTCAGTGCCTTGGGCCTTTCAGAAGCCAGGTTCCC
AAGGTTTGCAGCCAGGTTGATCTTTGAGCTTTGGCAAGACAGAGAAAAGCCCAGTGAACATTCCGTCCGG
ATTCTTTACAATGGCGTCGATGTCACATTCCACACCTCTTTCTGCCAAGACCACCACAAGCGTTCTCCCA
AGCCCATGTGCCCGCTTGAAAACTTGGTCCGCTTTGTGAAAAGGGACATGTTTGTAGCCCTGGGTGGCAG
TGGTACAAATTATTATGATGCATGTCACAGGGAAGGATTCTAA

Translation (480 aa):
MLFRNRFLLLLALAALLAFVSLSLQFFHLIPVSTPKNGMSSKSRKRIMPDPVTEPPVTDPVYEALLYCNI
PSVAERSMEGHAPHHFKLVSVHVFIRHGDRYPLYVIPKTKRPEIDCTLVANRKPYHPKLEAFISHMSKGS
GASFESPLNSLPLYPNHPLCEMGELTQTGVVQHLQNGQLLRDIYLKKHKLLPNDWSADQLYLETTGKSRT
LQSGLALLYGFLPDFDWKKIYFRHQPSALFCSGSCYCPVRNQYLEKEQRRQYLLRLKNSQLEKTYGEMAK
IVDVPTKQLRAANPIDSMLCHFCHNVSFPCTRNGCVDMEHFKVIKTHQIEDERERREKKLYFGYSLLGAH
PILNQTIGRMQRATEGRKEELFALYSAHDVTLSPVLSALGLSEARFPRFAARLIFELWQDREKPSEHSVR
ILYNGVDVTFHTSFCQDHHKRSPKPMCPLENLVRFVKRDMFVALGGSGTNYYDACHREGF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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