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Report for CCDS30893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30893.1 Public Homo sapiens 1 ETV3L 24 110 108 CCDS HistoryNCBI Gene:440695Re-query CCDS DB by CCDS ID:30893.1Re-query CCDS DB by GeneID:440695See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30893.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454449.3 ENSP00000430271.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000454449.3Link to Ensembl Protein Viewer:ENSP00000430271.1Re-query CCDS DB by Nucleotide ID:ENST00000454449Re-query CCDS DB by Protein ID:ENSP00000430271
Original member Current member EBI ENST00000671942.1 ENSP00000500028.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000671942.1Link to Ensembl Protein Viewer:ENSP00000500028.1Re-query CCDS DB by Nucleotide ID:ENST00000671942Re-query CCDS DB by Protein ID:ENSP00000500028
Original member Current member EBI ENST00000672100.1 ENSP00000500154.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672100.1Link to Ensembl Protein Viewer:ENSP00000500154.1Re-query CCDS DB by Nucleotide ID:ENST00000672100Re-query CCDS DB by Protein ID:ENSP00000500154
Original member Current member EBI ENST00000671886.1 ENSP00000500322.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000671886.1Link to Ensembl Protein Viewer:ENSP00000500322.1Re-query CCDS DB by Nucleotide ID:ENST00000671886Re-query CCDS DB by Protein ID:ENSP00000500322
Original member Current member NCBI NM_001004341.2 NP_001004341.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004341.2Link to Protein Sequence:NP_001004341.1Re-query CCDS DB by Nucleotide ID:NM_001004341Re-query CCDS DB by Protein ID:NP_001004341Link to BLAST:NP_001004341.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004341.1 361 Q6ZN32 361 100% 0 0

Chromosomal Locations for CCDS 30893.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 157092649 157093127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157097868 157097988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157098706 157098895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157099141 157099378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157099466 157099523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGCACTGCAGCTGCTTGGCTGAGGGCATCCCAGCCAACCCCGGCAACTGGATCTCAGGGTTGGCCTTCC
CTGATTGGGCCTACAAAGCCGAGTCGTCCCCAGGCTCCCGGCAGATCCAGCTGTGGCACTTCATCCTGGA
GCTGCTGCAGAAGGAAGAGTTCCGCCATGTCATCGCCTGGCAGCAGGGAGAGTACGGGGAATTTGTCATC
AAGGATCCAGATGAGGTGGCCCGCCTCTGGGGCCGCAGGAAATGCAAACCACAGATGAATTATGACAAGC
TGAGCCGGGCCCTCAGATATTACTACAATAAGAGGATCCTGCATAAGACCAAAGGCAAAAGGTTCACATA
CAAGTTCAACTTCAGCAAGCTCATCGTAGTCAACTATCCTTTGTGGGAAGTGCGGGCGCCGCCATCCCCC
CACTTGCTGCTGGGGGCCCCTGCCCTGTGTCGGCCAGCGCTGGTGCCCGTGGGTGTGCAGAGTGAGCTCC
TGCACAGCATGCTATTTGCCCATCAGGCCATGGTGGAGCAGCTGACAGGACAGCAGACCCCCCGAGGGCC
ACCAGAGACCTCTGGGGATAAGAAGGGGAGCAGCAGCAGCGTCTACCGACTTGGCTCTGCCCCAGGCCCC
TGCCGGCTGGGCCTTTGCTGCCATTTGGGGAGCGTCCAAGGCGAGCTGCCTGGTGTTGCCTCCTTCACTC
CTCCCCTCCCGCCCCCTCTGCCCTCCAACTGGACCTGTCTCTCGGGGCCCTTCTTGCCTCCTCTCCCGTC
AGAGCAGCAGCTCCCAGGGGCTTTTAAGCCAGACATCCTGCTCCCAGGACCTAGGAGCCTCCCAGGGGCC
TGGCATTTTCCAGGGCTTCCTCTCTTGGCAGGGCTGGGACAGGGTGCGGGTGAGAGGCTTTGGCTCTTGT
CCCTCAGGCCCGAGGGGCTGGAAGTAAAGCCTGCTCCCATGATGGAGGCAAAGGGAGGCCTGGATCCCAG
GGAGGTCTTCTGCCCAGAGACCCGCAGACTCAAAACTGGGGAGGAAAGCCTTACTTCCCCCAATCTGGAG
AACCTCAAAGCAGTGTGGCCCTTGGATCCTCCTTAA

Translation (361 aa):
MHCSCLAEGIPANPGNWISGLAFPDWAYKAESSPGSRQIQLWHFILELLQKEEFRHVIAWQQGEYGEFVI
KDPDEVARLWGRRKCKPQMNYDKLSRALRYYYNKRILHKTKGKRFTYKFNFSKLIVVNYPLWEVRAPPSP
HLLLGAPALCRPALVPVGVQSELLHSMLFAHQAMVEQLTGQQTPRGPPETSGDKKGSSSSVYRLGSAPGP
CRLGLCCHLGSVQGELPGVASFTPPLPPPLPSNWTCLSGPFLPPLPSEQQLPGAFKPDILLPGPRSLPGA
WHFPGLPLLAGLGQGAGERLWLLSLRPEGLEVKPAPMMEAKGGLDPREVFCPETRRLKTGEESLTSPNLE
NLKAVWPLDPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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