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Report for CCDS30871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30871.1 Public Homo sapiens 1 PGLYRP4 24 110 108 CCDS HistoryNCBI Gene:57115Re-query CCDS DB by CCDS ID:30871.1Re-query CCDS DB by GeneID:57115See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30871.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359650.10 ENSP00000352672.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359650.10Link to Ensembl Protein Viewer:ENSP00000352672.5Re-query CCDS DB by Nucleotide ID:ENST00000359650Re-query CCDS DB by Protein ID:ENSP00000352672
Original member Current member NCBI NM_020393.4 NP_065126.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020393.4Link to Protein Sequence:NP_065126.2Re-query CCDS DB by Nucleotide ID:NM_020393Re-query CCDS DB by Protein ID:NP_065126Link to BLAST:NP_065126.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065126.2 373 Q96LB8-1 373 100% 0 0

Chromosomal Locations for CCDS 30871.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153330767 153330945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153337181 153337299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153340381 153340579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153341627 153341779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153343090 153343208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153345169 153345382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153346102 153346191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153347884 153347932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGCTGCCGTGGCTTCTTGTCTTCTCTGCTCTGGGTATCCAGGCCTGGGGTGATTCCTCCTGGAACAAAA
CACAAGCTAAACAGGTATCAGAGGGGCTCCAGTACCTATTTGAGAACATCTCCCAGCTCACTGAAAAAGG
CCTTCCCACAGATGTCTCCACCACGGTCTCTCGCAAGGCATGGGGGGCAGAAGCTGTTGGCTGCAGTATT
CAGCTGACCACGCCAGTGAATGTCCTTGTTATACACCATGTCCCTGGACTGGAGTGTCACGACCAGACAG
TCTGCAGCCAGAGACTGCGGGAACTGCAGGCCCATCATGTCCACAACAACAGTGGGTGTGATGTGGCCTA
CAACTTCCTGGTTGGGGATGATGGCAGGGTGTATGAAGGTGTTGGCTGGAATATCCAAGGAGTGCACACC
CAAGGCTACAACAACATCTCCCTGGGCTTTGCCTTCTTTGGCACTAAGAAAGGCCACAGTCCCAGCCCTG
CTGCCCTGTCGGCCATGGAAAACCTAATCACCTATGCTGTCCAGAAGGGCCACCTGTCATCCAGTTATGT
TCAGCCACTTCTTGGGAAAGGCGAGAACTGCCTGGCCCCTCGGCAGAAGACAAGCCTGAAGAAGGCTTGC
CCCGGCGTTGTCCCACGGTCTGTGTGGGGAGCCAGGGAGACCCACTGTCCCAGGATGACTCTCCCAGCGA
AGTATGGCATCATTATCCACACTGCCGGGAGGACCTGCAACATTTCTGATGAGTGCCGCCTGCTGGTCCG
GGACATCCAGTCTTTCTACATAGACAGGCTCAAGTCATGCGACATTGGTTATAACTTCCTGGTGGGCCAG
GATGGCGCCATTTATGAAGGGGTGGGCTGGAATGTCCAAGGCTCCTCCACCCCTGGCTACGATGACATTG
CCCTGGGCATTACCTTCATGGGCACCTTCACAGGTATACCACCCAATGCTGCAGCACTAGAGGCAGCCCA
AGACCTGATCCAGTGTGCCATGGTCAAAGGGTACCTGACTCCCAACTACCTGCTGGTGGGCCACAGTGAT
GTGGCCCGAACCTTGTCTCCTGGGCAGGCTTTGTACAACATCATCAGCACCTGGCCTCATTTCAAACACT
GA

Translation (373 aa):
MLPWLLVFSALGIQAWGDSSWNKTQAKQVSEGLQYLFENISQLTEKGLPTDVSTTVSRKAWGAEAVGCSI
QLTTPVNVLVIHHVPGLECHDQTVCSQRLRELQAHHVHNNSGCDVAYNFLVGDDGRVYEGVGWNIQGVHT
QGYNNISLGFAFFGTKKGHSPSPAALSAMENLITYAVQKGHLSSSYVQPLLGKGENCLAPRQKTSLKKAC
PGVVPRSVWGARETHCPRMTLPAKYGIIIHTAGRTCNISDECRLLVRDIQSFYIDRLKSCDIGYNFLVGQ
DGAIYEGVGWNVQGSSTPGYDDIALGITFMGTFTGIPPNAAALEAAQDLIQCAMVKGYLTPNYLLVGHSD
VARTLSPGQALYNIISTWPHFKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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