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Report for CCDS3066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3066.1 Public Homo sapiens 3 TRH 24 110 108 CCDS HistoryNCBI Gene:7200Re-query CCDS DB by CCDS ID:3066.1Re-query CCDS DB by GeneID:7200See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3066.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302649.4 ENSP00000303452.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302649.4Link to Ensembl Protein Viewer:ENSP00000303452.3Re-query CCDS DB by Nucleotide ID:ENST00000302649Re-query CCDS DB by Protein ID:ENSP00000303452
Original member Current member NCBI NM_007117.5 NP_009048.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007117.5Link to Protein Sequence:NP_009048.1Re-query CCDS DB by Nucleotide ID:NM_007117Re-query CCDS DB by Protein ID:NP_009048Link to BLAST:NP_009048.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009048.1 242 P20396 242 100% 0 0

Chromosomal Locations for CCDS 3066.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129975817 129976027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129976699 129977216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGCCCGGCCCTTGGTTGCTGCTCGCTCTGGCTTTGACCCTGAACCTGACCGGTGTCCCCGGCGGCCGTG
CTCAGCCAGAGGCGGCCCAGCAGGAGGCAGTGACGGCCGCGGAGCATCCGGGCCTGGATGACTTCCTGCG
CCAGGTGGAGCGCCTCCTCTTCCTCCGGGAAAACATCCAGCGGCTGCAAGGGGACCAGGGTGAGCACTCC
GCGTCCCAGATCTTTCAATCTGACTGGCTCTCCAAACGTCAGCATCCAGGCAAAAGAGAGGAGGAGGAGG
AAGAGGGAGTTGAAGAAGAGGAAGAGGAAGAAGGGGGGGCTGTGGGACCCCACAAACGGCAGCACCCTGG
CCGACGAGAAGATGAGGCTTCATGGTCAGTCGATGTAACCCAGCACAAGCGGCAGCATCCTGGCCGGCGC
TCCCCCTGGCTTGCATATGCTGTCCCGAAGCGGCAGCACCCAGGCAGAAGGCTGGCAGATCCCAAGGCTC
AAAGGAGCTGGGAAGAAGAGGAGGAGGAGGAAGAGAGAGAGGAAGACCTGATGCCTGAAAAACGCCAGCA
TCCGGGCAAGAGGGCCCTGGGAGGCCCCTGTGGGCCCCAGGGAGCCTATGGTCAAGCGGGCCTTCTGCTG
GGGCTCCTGGATGACCTGAGTAGGAGCCAGGGAGCTGAGGAAAAGCGGCAGCACCCTGGTCGGCGGGCAG
CCTGGGTCAGAGAGCCCCTGGAGGAGTGA

Translation (242 aa):
MPGPWLLLALALTLNLTGVPGGRAQPEAAQQEAVTAAEHPGLDDFLRQVERLLFLRENIQRLQGDQGEHS
ASQIFQSDWLSKRQHPGKREEEEEEGVEEEEEEEGGAVGPHKRQHPGRREDEASWSVDVTQHKRQHPGRR
SPWLAYAVPKRQHPGRRLADPKAQRSWEEEEEEEEREEDLMPEKRQHPGKRALGGPCGPQGAYGQAGLLL
GLLDDLSRSQGAEEKRQHPGRRAAWVREPLEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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