NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3064.1 Public Homo sapiens 3 H1-8 24 110 108 CCDS HistoryNCBI Gene:132243Re-query CCDS DB by CCDS ID:3064.1Re-query CCDS DB by GeneID:132243See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3064.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324382.7 ENSP00000319799.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324382.7Link to Ensembl Protein Viewer:ENSP00000319799.2Re-query CCDS DB by Nucleotide ID:ENST00000324382Re-query CCDS DB by Protein ID:ENSP00000319799
Original member Current member NCBI NM_153833.3 NP_722575.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153833.3Link to Protein Sequence:NP_722575.1Re-query CCDS DB by Nucleotide ID:NM_153833Re-query CCDS DB by Protein ID:NP_722575Link to BLAST:NP_722575.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722575.1 346 Q8IZA3-1 346 100% 0 0

Chromosomal Locations for CCDS 3064.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129543219 129543306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129547391 129547680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129549001 129549364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129550745 129550809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129551107 129551340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGCTCCTGGGAGCGTCACCAGCGACATCTCACCCTCCTCGACTTCCACAGCAGGATCATCCAGGTCTC
CTGAATCTGAAAAGCCAGGCCCGAGCCACGGCGGTGTCCCACCAGGAGGCCCGAGCCACAGCAGCCTCCC
GGTGGGACGCCGCCACCCCCCGGTGCTACGCATGGTGCTGGAGGCGCTGCAGGCTGGGGAGCAGCGCCGG
GGCACGTCGGTGGCAGCTATCAAGCTCTACATCCTGCACAAGTACCCAACAGTGGACGTCCTCCGCTTCA
AGTACCTGCTGAAGCAGGCGCTGGCCACTGGCATGCGCCGTGGCCTCCTCGCCAGGCCCCTCAACTCCAA
AGCCAGGGGGGCCACTGGCAGCTTCAAATTAGTTCCCAAGCACAAGAAGAAAATCCAGCCCAGGAAGATG
GCCCCCGCGACGGCTCCCAGGAGAGCGGGTGAGGCCAAGGGGAAGGGCCCCAAGAAACCAAGTGAGGCCA
AGGAGGACCCTCCCAACGTGGGCAAGGTGAAAAAGGCAGCCAAGAGGCCAGCAAAGGTGCAGAAGCCTCC
TCCCAAGCCAGGCGCAGCCACAGAGAAGGCTCGCAAGCAAGGCGGCGCGGCCAAGGACACCAGGGCACAG
TCGGGAGAGGCTAGGAAGGTGCCCCCCAAGCCAGACAAGGCCATGCGGGCACCTTCCAGTGCTGGTGGGC
TCAGCAGGAAGGCAAAGGCCAAAGGCAGCAGGAGCAGCCAAGGAGATGCTGAGGCCTACAGGAAAACCAA
AGCTGAGAGTAAGAGTTCAAAACCCACGGCCAGCAAGGTCAAGAATGGTGCTGCTTCCCCGACCAAAAAG
AAGGTGGTGGCCAAGGCCAAGGCCCCTAAAGCTGGGCAGGGGCCAAACACCAAGGCTGCTGCTCCTGCTA
AGGGCAGTGGGTCCAAGGTGGTACCTGCACATTTGTCCAGGAAGACAGAGGCCCCCAAGGGCCCTAGAAA
GGCTGGGCTGCCCATCAAGGCCTCATCATCCAAAGTGTCCAGCCAGAGGGCTGAAGCTTAG

Translation (346 aa):
MAPGSVTSDISPSSTSTAGSSRSPESEKPGPSHGGVPPGGPSHSSLPVGRRHPPVLRMVLEALQAGEQRR
GTSVAAIKLYILHKYPTVDVLRFKYLLKQALATGMRRGLLARPLNSKARGATGSFKLVPKHKKKIQPRKM
APATAPRRAGEAKGKGPKKPSEAKEDPPNVGKVKKAAKRPAKVQKPPPKPGAATEKARKQGGAAKDTRAQ
SGEARKVPPKPDKAMRAPSSAGGLSRKAKAKGSRSSQGDAEAYRKTKAESKSSKPTASKVKNGAASPTKK
KVVAKAKAPKAGQGPNTKAAAPAKGSGSKVVPAHLSRKTEAPKGPRKAGLPIKASSSKVSSQRAEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH