NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30453.1 Public Mus musculus X Chrdl1 23 108 98 CCDS HistoryNCBI Gene:83453Re-query CCDS DB by CCDS ID:30453.1Re-query CCDS DB by GeneID:83453See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30453.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074660.11 ENSMUSP00000074230.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074660.11Link to Ensembl Protein Viewer:ENSMUSP00000074230.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000074660Re-query CCDS DB by Protein ID:ENSMUSP00000074230
Original member Current member EBI ENSMUST00000166406.2 ENSMUSP00000130284.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166406.2Link to Ensembl Protein Viewer:ENSMUSP00000130284.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000166406Re-query CCDS DB by Protein ID:ENSMUSP00000130284
Original member Current member NCBI NM_031258.3 NP_112548.2 Accepted alive Link to Nucleotide Sequence:NM_031258.3Link to Protein Sequence:NP_112548.2Re-query CCDS DB by Nucleotide ID:NM_031258Re-query CCDS DB by Protein ID:NP_112548Link to BLAST:NP_112548.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112548.2 333 Q920C1-2 333 100% 0 0

Chromosomal Locations for CCDS 30453.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 143299822 143300063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143303349 143303517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143311082 143311149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143325989 143326082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143327922 143328064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143365897 143365990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143368352 143368464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143390007 143390085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGGATGGCATGAAATACATCATTTCCTTATTTTTCATCTTTGTTTTCCTAGAAGGAAGCAAAACAGAAC
AAGTAAAACACTCAGACACATATTGCGTGTTTCAAGACAAGAAGTATAGAGTGGGTGAGAAATGGCATCC
CTACCTGGAACCGTATGGACTGGTTTACTGTGTGAACTGCATCTGCTCTGAGAATGGGAATGTGCTTTGC
AGCCGAGTCAGATGTCCAAGTCTTCATTGCCTTTCACCCGTGCATATTCCTCATCTCTGTTGCCCCCGCT
GCCCAGACTCCTTACCACCAGTGAACAATAAGGTGACCAGCAAGTCATGCGAATACAATGGAACCACTTA
CCAACATGGAGAACTGTTCATAGCTGAAGGGCTCTTTCAGAACCGGCAACCCAATCAGTGCAGTCAGTGT
AGCTGCTCGGAGGGGAATGTATACTGTGGTCTCAAGACTTGCCCCAAACTGACCTGTGCATTCCCAGTCT
CTGTTCCAGATTCTTGCTGCCGAGTATGCAGAGGGGATGCAGAATTATCGTGGGAACATGCGGATGGTGA
TATCTTCCGGCAACCTGCCAACAGAGAAGCAAGACATTCTTACCTCCGTTCCCCCTACGATCCTCCACCA
AACAGACAAGCTGGAGGTCTTCCCCGCTTTCCTGGGAGCAGAAGTCACCGGGGAGCTGTTATAGATTCCC
AGCAAGCATCCGGGACCATCGTGCAGATTGTCATCAATAACAAGCACAAACATGGACAAGTGTGTGTTTC
CAATGGAAAGACCTACTCTCATGGAGAGTCCTGGCACCCAAATCTACGAGCATTTGGCATTGTGGAATGT
GTACTATGCACTTGTAATGTCACCAAGCAAGAATGTAAGAAAATCCACTGCCCCAATCGATACCCCTGCA
AGTATCCTCAAAAAATAGATGGAAAGTGCTGCAAGGTGTGCCCAGGTAAAAAGGCAAAAGGTGCATTGGC
TGGAGGCCCTGCCTTTGGTTGA

Translation (333 aa):
MDGMKYIISLFFIFVFLEGSKTEQVKHSDTYCVFQDKKYRVGEKWHPYLEPYGLVYCVNCICSENGNVLC
SRVRCPSLHCLSPVHIPHLCCPRCPDSLPPVNNKVTSKSCEYNGTTYQHGELFIAEGLFQNRQPNQCSQC
SCSEGNVYCGLKTCPKLTCAFPVSVPDSCCRVCRGDAELSWEHADGDIFRQPANREARHSYLRSPYDPPP
NRQAGGLPRFPGSRSHRGAVIDSQQASGTIVQIVINNKHKHGQVCVSNGKTYSHGESWHPNLRAFGIVEC
VLCTCNVTKQECKKIHCPNRYPCKYPQKIDGKCCKVCPGKKAKGALAGGPAFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH