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Report for CCDS30388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30388.1 Public Mus musculus X Sytl4 23 108 98 CCDS HistoryNCBI Gene:27359Re-query CCDS DB by CCDS ID:30388.1Re-query CCDS DB by GeneID:27359See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30388.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033608.14 ENSMUSP00000033608.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033608.14Link to Ensembl Protein Viewer:ENSMUSP00000033608.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033608Re-query CCDS DB by Protein ID:ENSMUSP00000033608
Original member Current member NCBI NM_013757.2 NP_038785.1 Accepted alive Link to Nucleotide Sequence:NM_013757.2Link to Protein Sequence:NP_038785.1Re-query CCDS DB by Nucleotide ID:NM_013757Re-query CCDS DB by Protein ID:NP_038785Link to BLAST:NP_038785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038785.1 673 Q9R0Q1-1 673 100% 0 0

Chromosomal Locations for CCDS 30388.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 133937902 133938050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133940323 133940531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133941242 133941341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133943560 133943668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133947737 133947898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133948691 133948793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133949047 133949225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133950272 133950367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133951111 133951214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133951327 133951417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133951749 133951824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133952267 133952368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133960667 133960772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133961009 133961118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133961683 133961898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133962125 133962234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2022 nt):
ATGTCGGAGATACTAGACCTCTCTTTTCTGTCCGAGATGGAAAGGGATTTGATCCTCGGTGTTCTGCAGA
GAGATGAAGAACTCAGAAAAGCAGATGAGAAAAGGATTCGGCGACTGAAGAATGAGCTCCTGGAGATCAA
AAGAAAAGGGGCCAAAAGGGGCAGCCAACACTATAGTGATCGAACCTGTGCCAGGTGCCAGGAGGGCCTG
GGCCGCTTAATTCCCAAAAGCAGCACTTGTGTGGGCTGCAATCATTTAGTGTGCCGAGAATGCCGAGTTC
TGGAAAGCAATGGCTCTTGGAGGTGCAAGGTGTGCTCGAAGGAGATAGAGCTGAAGAAAGCAACTGGAGA
TTGGTTTTATGACCAGAAAGTAAATCGCTTTGATTACCGAACAGGCAGCGAGATAATCAGGATGTCCCTG
CGCCAGAAGCCTGCAGTGAATAAAAGAGAGACAGCGGGGCAGTCCCTCCTTCAGCAGACACAGATGGGTG
ATATCTGGCCAGGAAGAAGGATCATTCAAGAACAACAACAGAGGGAACAAAGTGTGCTGTTTGAAGTGCC
AAAGACCAGAAGTGGAAAGAGTGCACTGGAGGCTGAGAGCGAGAGTCTGGATAGCTACACTGCTGACTCA
GACAGCACCTCCAGGAGAGATTCTCTGGATAAATCTGGACTCTTCCCAGAATGGAAGAAGATGTCCGCTC
CCAAATCTCAAGTTGAAAAGGAAATTCCACCAGGGAACCAAAATGCAGTCTGTGGTGATGAGGGTGACAT
GGTATTCAAGAAGAACACCAAAAAAGTCCTGAGGCCTTCAGAATACACTAAGTCTGTGATAGACCTTCGC
CCAGAAGATGTGGCCCAAGAAAGTGGCATCTTGGGAGACAGAAGCAAATCTGTACCAGGCCTCAGTGTGG
ATATGGAAGAAGAGGAGGAGGAGGAAGAGGACATTGACCACCTGGTGAAGTTGCACCGCCAGAAACTGGC
CAGAGGCAGCATGCAGAGTGGCTCCTCCATGAGTACCCTTGGCAGCATTATGAGTATCTATAGCGAAGCT
GGTGATTTTGGGAACATCTCTGTGACGGGCAAGATTGCCTTTTCACTGAAGTTTGAGCAGAAAACACAGA
CTTTGGTCATCCATGTCAAGGAGTGCCACCAGCTGGCCTATGCTGATGAAGCCAAGAAGCGTTCTAACCC
ATATGTGAAGACTTATCTTCTGCCTGACAAGTCCCGCCAAGGAAAAAGAAAAACCAGCATCAAGCGGGAC
ACCATCAATCCACTATATGATGAGACCTTTCGGTACGAGATTTCGGAATCTCTTCTGGCTCAGAGGACTT
TGCAGTTTTCCGTTTGGCATCATGGTCGTTTTGGCAGAAACACTTTCCTTGGAGAGGCGGAGGTCCACAT
GGACTCTTGGAAGCTGGATAAGAAGCTGGATCACTGCCTCCCTTTACATGGAAAGATCAGTACTGAGTCC
TCGCCTGGTTTGCCAGCACACAAAGGCGAGTTGGTGGTTTCATTGAAATACATCCCAGCCTCCAAACTCC
CTGTTGGAGGTGACCGGAAAAAGAGTAAAGGTGGGGAAGGGGGAGAACTCCAGGTGTGGATCAAAGAAGC
CAAGAACCTGACGGCTGCCAAATCAGGAGGGACTTCAGACAGCTTTGTCAAGGGATACCTCCTTCCCATG
AGGAACAAGGCCAGTAAGCGTAAAACTCCTGTGATGAAGAAGACTCTGAGTCCCCACTACAACCATACAT
TTGTCTACAATGGTGTGAGGCTGGAAGATCTACAACACATGTGCCTGGAACTGACTGTATGGGACCGGGA
GCCCCTGGCCAGCAATGACTTCCTGGGAGGGGTCAGACTGGGTGTTGGCACTGGGATCAGTAATGGCGAA
GTGGTGGACTGGATGGATTCGACTGGTGAAGAAGTAAGCTTGTGGCAGAAGATGCGACAGTACCCAGGGT
CTTGGGCAGAAGGAACTCTGCAGCTCCGTTCTTCAATGGTCAAGCAGAAGCTGGGTGTATGA

Translation (673 aa):
MSEILDLSFLSEMERDLILGVLQRDEELRKADEKRIRRLKNELLEIKRKGAKRGSQHYSDRTCARCQEGL
GRLIPKSSTCVGCNHLVCRECRVLESNGSWRCKVCSKEIELKKATGDWFYDQKVNRFDYRTGSEIIRMSL
RQKPAVNKRETAGQSLLQQTQMGDIWPGRRIIQEQQQREQSVLFEVPKTRSGKSALEAESESLDSYTADS
DSTSRRDSLDKSGLFPEWKKMSAPKSQVEKEIPPGNQNAVCGDEGDMVFKKNTKKVLRPSEYTKSVIDLR
PEDVAQESGILGDRSKSVPGLSVDMEEEEEEEEDIDHLVKLHRQKLARGSMQSGSSMSTLGSIMSIYSEA
GDFGNISVTGKIAFSLKFEQKTQTLVIHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRD
TINPLYDETFRYEISESLLAQRTLQFSVWHHGRFGRNTFLGEAEVHMDSWKLDKKLDHCLPLHGKISTES
SPGLPAHKGELVVSLKYIPASKLPVGGDRKKSKGGEGGELQVWIKEAKNLTAAKSGGTSDSFVKGYLLPM
RNKASKRKTPVMKKTLSPHYNHTFVYNGVRLEDLQHMCLELTVWDREPLASNDFLGGVRLGVGTGISNGE
VVDWMDSTGEEVSLWQKMRQYPGSWAEGTLQLRSSMVKQKLGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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