NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30320.1 Public Mus musculus X Rtl5 23 108 98 CCDS HistoryNCBI Gene:331474Re-query CCDS DB by CCDS ID:30320.1Re-query CCDS DB by GeneID:331474See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 30320.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113631.1 ENSMUSP00000109261.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113631.1Link to Ensembl Protein Viewer:ENSMUSP00000109261.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113631Re-query CCDS DB by Protein ID:ENSMUSP00000109261
Original member Current member EBI ENSMUST00000119076.8 ENSMUSP00000133001.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119076.8Link to Ensembl Protein Viewer:ENSMUSP00000133001.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119076Re-query CCDS DB by Protein ID:ENSMUSP00000133001
Original member Current member EBI ENSMUST00000188731.1 ENSMUSP00000139504.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188731.1Link to Ensembl Protein Viewer:ENSMUSP00000139504.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188731Re-query CCDS DB by Protein ID:ENSMUSP00000139504
Original member NCBI NM_001278534.1 NP_001265463.1 Updated not alive Link to Nucleotide Sequence:NM_001278534.1Link to Protein Sequence:NP_001265463.1Re-query CCDS DB by Nucleotide ID:NM_001278534Re-query CCDS DB by Protein ID:NP_001265463
Current member NCBI NM_001278534.2 NP_001265463.1 Accepted alive Link to Nucleotide Sequence:NM_001278534.2Link to Protein Sequence:NP_001265463.1Re-query CCDS DB by Nucleotide ID:NM_001278534Re-query CCDS DB by Protein ID:NP_001265463Link to BLAST:NP_001265463.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265463.1 599 Q5DTT4 599 100% 0 0

Chromosomal Locations for CCDS 30320.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 102069063 102070862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGTCTGAAGCGGCGGGAAATCTCAATAGCCTCCGCTTGGCGAATGTGGCCCTGCGAGAGGAGTTAAATG
CCCTTCGAGGAGAGAATGTCCAGCTGGGCCTGCAGCTCGGAAGAGCCTTGGCCGAGGTTAATTCCTTGCG
GGGCAATGTCTCGAGCTACATCCGCTGGCCCATGCCCATAGTACCGGTCCTTGCCGAGGAGAACTTTGAG
TTCCTGCTCAATGAGACTGATCCCACTCCTGAGGAGGAGGAAGAGGAGGAGGAGGAGGTGCCTTTCCTGT
GCTGGCCTCCTCCACGCACAGATCCCGAGTACGTCTCAGATGATCTTTTGATTAATGTGGTCCAGGACTA
TACCAACCCCGACGGGTCCAGTGACCCTCCTCTGTCACCCAGCCCGTCCCAGCCGGAACTGCACTCCCCC
ATGTTAAAGGAGCCAACCTTTGAGTTCCTTTTGCCACCGCTGGAGCGGCCAGACATAGAACCCTTTTCAG
GCGACCCAGTGTACCTGGCTGAATTTCTGATGCAGCTAGAGACTTTCATAGCAGATCACGAGGATCACTT
CCCTGGGGGCGCGGAACGGGTGGCATTTCTCATCTCCTTTTTCACAGGGGAAGCGAGAGACTGGGCTATC
TCAGTCACTCAGGAAGGAAGCTCCTTGCATGCCAACTTCCCGCGCTTCCTGGATGAAATCCGTAAGGAAT
TCTGTGGCCCCATCCCCTCACGCGTGGCTAAAAAGGCCATACGCAAGCTCAAGCAGGGAAACTGTACCCT
GGGCAGCTATGCAGATGCTTTTCAGTTCTTGGCCCAGTTCTTGTCTTGGGATGACTGTCGCCTCCAAAAC
CAATTTCTCAAAGGCTTGTCAGAAATTTTTCGAAAGGAACTCTTATGGTCAACTGAAGTGGCCGACCTGG
ATGAGCTGATTCTTGAGTGTGTCAAGATAGAAAGGAAAGTGCGTGTCCCCAAGACAGCCTCGCTCACTGG
AGTTCAAAATAGCTGCTGCCCCTTTGCACTAATTCCTAATGAGGATGAAAATGAAGGTGTGGAGTTCTAC
AGTGAAAATGAGGGTGAGGGTGAAGAGGCAGGCGGGTACAGGCTTTATCTGAAGGATCAGAGGCAGCACA
TGACAGCTTTCCCACAAGAGATGAGGGAGGAAGAGGAGGAGATGAGGAAAGAGGAAGACGAGATGGAGGA
TGAGGAGGATGAGGACGAGGATGAGGATTATGAATTTGAGGAGGAGGATGAAGACGACGACGACGAGGAG
GAAGAGGAGGAGGAAGAGGAGGAGGAAGACAAGGAGGAGGAGATGAAGAATGAGGATAGCGATGAGAATA
AGTATGAAGAAGAAGATGAAGTTATCGTTAGGGTCCTGGAGCCAGAGCAGGAGCAAGAGAGGGAGGAGAT
AGAGCACGAGCATGTGTATGTGCACGAGCACATACACGCCCATGTGCACACACTTGCTGCCCACCACCAC
GGCCTACATGGAGAGCTCATGGTGATGGACGAACCTGTCCTTGTTGACACGTCAACCCAGACCATTAGCT
CCGCCATAGGCTACCATGCTGAAAATTACCTGGGGGTATCCCCTTCTGTAATGCATTCTAGCAGACAGAG
GAGCCAGAATCGAGTCCCACTTCTGGAGGGCCTTCCCGGGACCAATTCATCCTTCTACAGCCCGCCACCA
CTGATGCGCCATGCAGGTCGCTTGGGGCAACGCCAAATGCGAAGATGTCCCTCAGTGCTCTTCTGCCTCA
CTCCTAGGCAGGGGGGCCACCGAGCTACTCAAGGTCGAATTCGAGTGTGA

Translation (599 aa):
MSEAAGNLNSLRLANVALREELNALRGENVQLGLQLGRALAEVNSLRGNVSSYIRWPMPIVPVLAEENFE
FLLNETDPTPEEEEEEEEEVPFLCWPPPRTDPEYVSDDLLINVVQDYTNPDGSSDPPLSPSPSQPELHSP
MLKEPTFEFLLPPLERPDIEPFSGDPVYLAEFLMQLETFIADHEDHFPGGAERVAFLISFFTGEARDWAI
SVTQEGSSLHANFPRFLDEIRKEFCGPIPSRVAKKAIRKLKQGNCTLGSYADAFQFLAQFLSWDDCRLQN
QFLKGLSEIFRKELLWSTEVADLDELILECVKIERKVRVPKTASLTGVQNSCCPFALIPNEDENEGVEFY
SENEGEGEEAGGYRLYLKDQRQHMTAFPQEMREEEEEMRKEEDEMEDEEDEDEDEDYEFEEEDEDDDDEE
EEEEEEEEEDKEEEMKNEDSDENKYEEEDEVIVRVLEPEQEQEREEIEHEHVYVHEHIHAHVHTLAAHHH
GLHGELMVMDEPVLVDTSTQTISSAIGYHAENYLGVSPSVMHSSRQRSQNRVPLLEGLPGTNSSFYSPPP
LMRHAGRLGQRQMRRCPSVLFCLTPRQGGHRATQGRIRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH