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Report for CCDS30241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30241.1 Public Mus musculus X Mtcp1 23 108 98 CCDS HistoryNCBI Gene:17763Re-query CCDS DB by CCDS ID:30241.1Re-query CCDS DB by GeneID:17763See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30241.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033542.10 ENSMUSP00000033542.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033542.10Link to Ensembl Protein Viewer:ENSMUSP00000033542.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033542Re-query CCDS DB by Protein ID:ENSMUSP00000033542
Original member Current member EBI ENSMUST00000114081.1 ENSMUSP00000109715.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114081.1Link to Ensembl Protein Viewer:ENSMUSP00000109715.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114081Re-query CCDS DB by Protein ID:ENSMUSP00000109715
Original member Current member NCBI NM_001039373.5 NP_001034462.1 Accepted alive Link to Nucleotide Sequence:NM_001039373.5Link to Protein Sequence:NP_001034462.1Re-query CCDS DB by Nucleotide ID:NM_001039373Re-query CCDS DB by Protein ID:NP_001034462Link to BLAST:NP_001034462.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034462.1 107 Q60945-1 107 100% 0 0

Chromosomal Locations for CCDS 30241.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 75411222 75411269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75411352 75411522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75411635 75411739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (324 nt):
ATGGCAAGAGAGGATGTGGGGGCTCCACCCGATCATCTCTGGGTTCACCAAGAAGGAGTCTACCGCGACG
AATATCAGCGCACATGGGTAGCTGTGGTGGAAGAGGAGACAAGTTTCCTAAAGGCTCGAGTCCAGCAAGT
TCAGGTTCCTTTAGGTGACGCAACTAAGCCAAGTCACCTTCTTACCTCCCAACTACCTCTCATGTGGCAA
CTCTACCCAGAGGAGCGCTACATGGATAACAACTCTCGCTTGTGGCAGATTCAGCATCATTTAATGGTCA
GGGGAGTACAGGAACTACTCCTTAAACTTTTGCCTGATGATTAA

Translation (107 aa):
MAREDVGAPPDHLWVHQEGVYRDEYQRTWVAVVEEETSFLKARVQQVQVPLGDATKPSHLLTSQLPLMWQ
LYPEERYMDNNSRLWQIQHHLMVRGVQELLLKLLPDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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