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Report for CCDS3020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3020.1 Public Homo sapiens 3 PDIA5 24 110 108 CCDS HistoryNCBI Gene:10954Re-query CCDS DB by CCDS ID:3020.1Re-query CCDS DB by GeneID:10954See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3020.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316218.12 ENSP00000323313.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316218.12Link to Ensembl Protein Viewer:ENSP00000323313.7Re-query CCDS DB by Nucleotide ID:ENST00000316218Re-query CCDS DB by Protein ID:ENSP00000323313
Original member Current member NCBI NM_006810.4 NP_006801.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006810.4Link to Protein Sequence:NP_006801.1Re-query CCDS DB by Nucleotide ID:NM_006810Re-query CCDS DB by Protein ID:NP_006801Link to BLAST:NP_006801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006801.1 519 Q14554-1 519 100% 0 0

Chromosomal Locations for CCDS 3020.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 123067165 123067206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123089168 123089294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123092355 123092442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123102411 123102494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123102751 123102796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123106749 123106841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123110944 123111004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123116231 123116298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123124066 123124157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123124272 123124343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123130480 123130616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123145522 123145592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123146099 123146259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123150234 123150364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123154971 123155041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123161321 123161455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123161880 123161960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGCGCGGGCCGGGCCGGCGTGGCTGCTGCTGGCAATCTGGGTGGTCCTGCCATCATGGCTGTCCTCTG
CAAAGGTCTCCTCGCTCATTGAGAGAATCTCTGACCCCAAGGACTTGAAAAAACTGCTCAGAACCCGGAA
TAATGTACTGGTGCTTTACTCCAAATCTGAGGTGGCAGCTGAAAATCATCTCAGGTTACTGTCCACAGTG
GCCCAGGCGGTGAAAGGACAAGGGACCATCTGCTGGGTGGACTGTGGTGATGCAGAGAGTAGAAAATTGT
GCAAGAAGATGAAAGTTGACCTGAGCCCGAAGGACAAAAAGGTTGAATTATTCCATTACCAGGATGGTGC
ATTTCATACTGAATATAACCGAGCTGTGACATTTAAGTCCATAGTGGCCTTTTTGAAGGATCCAAAAGGG
CCCCCACTGTGGGAGGAAGATCCTGGAGCCAAAGATGTTGTCCACCTTGACAGTGAAAAGGACTTCAGAC
GGCTCCTGAAGAAGGAAGAGAAGCCGCTCCTGATCATGTTTTATGCCCCCTGGTGCAGCATGTGCAAGAG
GATGATGCCGCATTTCCAGAAGGCTGCGACTCAGCTGCGAGGCCACGCCGTGCTGGCCGGGATGAATGTC
TACTCCTCTGAATTTGAAAACATCAAGGAGGAGTACAGCGTGCGCGGCTTCCCCACCATCTGCTATTTTG
AGAAAGGACGGTTCTTGTTCCAGTATGACAACTATGGGTCCACAGCTGAGGACATTGTGGAGTGGCTGAA
GAATCCGCAGCCGCCACAGCCCCAGGTCCCTGAGACTCCCTGGGCAGATGAGGGCGGCTCCGTTTATCAC
CTGACCGATGAAGACTTTGACCAGTTTGTGAAGGAACACTCCTCTGTCCTCGTCATGTTCCACGCCCCAT
GGTGTGGCCACTGTAAGAAAATGAAGCCGGAGTTTGAGAAGGCAGCAGAAGCCCTCCATGGAGAAGCGGA
TAGCTCTGGTGTCCTTGCAGCTGTCGATGCCACTGTCAACAAGGCCCTGGCAGAAAGATTCCACATCTCA
GAGTTTCCTACGTTGAAGTATTTTAAGAATGGAGAGAAATACGCAGTGCCTGTGCTCAGGACAAAGAAGA
AGTTTCTCGAGTGGATGCAAAACCCTGAGGCCCCCCCGCCCCCAGAGCCCACGTGGGAAGAGCAGCAGAC
AAGCGTGTTGCACCTGGTGGGGGACAACTTCCGGGAGACCCTGAAGAAGAAGAAACACACCTTGGTCATG
TTCTACGCCCCTTGGTGCCCACACTGTAAGAAGGTCATTCCGCACTTTACTGCTACTGCTGATGCCTTCA
AAGATGACCGAAAGATTGCCTGTGCCGCTGTTGACTGTGTCAAAGACAAGAACCAAGACCTGTGCCAGCA
GGAGGCGGTCAAGGGCTACCCCACTTTCCACTACTACCACTATGGGAAGTTCGCAGAAAAGTATGACAGC
GACCGCACAGAATTGGGATTTACCAATTATATTCGAGCCCTCCGGGAGGGAGACCATGAAAGACTAGGGA
AAAAGAAGGAAGAGTTATAA

Translation (519 aa):
MARAGPAWLLLAIWVVLPSWLSSAKVSSLIERISDPKDLKKLLRTRNNVLVLYSKSEVAAENHLRLLSTV
AQAVKGQGTICWVDCGDAESRKLCKKMKVDLSPKDKKVELFHYQDGAFHTEYNRAVTFKSIVAFLKDPKG
PPLWEEDPGAKDVVHLDSEKDFRRLLKKEEKPLLIMFYAPWCSMCKRMMPHFQKAATQLRGHAVLAGMNV
YSSEFENIKEEYSVRGFPTICYFEKGRFLFQYDNYGSTAEDIVEWLKNPQPPQPQVPETPWADEGGSVYH
LTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAERFHIS
EFPTLKYFKNGEKYAVPVLRTKKKFLEWMQNPEAPPPPEPTWEEQQTSVLHLVGDNFRETLKKKKHTLVM
FYAPWCPHCKKVIPHFTATADAFKDDRKIACAAVDCVKDKNQDLCQQEAVKGYPTFHYYHYGKFAEKYDS
DRTELGFTNYIRALREGDHERLGKKKEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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