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Report for CCDS30161.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
30161.2 |
Public |
Mus musculus |
X |
Sox3 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:20675](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:30161.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:20675](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome X in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 30161.1 |
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation and orthologous transcript data. Northern blot analysis in PMID:8625802 also supports a longer (~2.3 kb) transcript in mouse. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 30161.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000135107.3 |
ENSMUSP00000115237.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000135107.3](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000115237.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000135107](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000115237](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_009237.2 |
NP_033263.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_009237.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_033263.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_009237](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_033263](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_009237.3 |
NP_033263.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_009237.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_033263.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_009237](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_033263](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_033263.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 30161.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1353 nt): ATGCGACCAGCTCGAGAGAACGCATCAGGTGAGAGAAGCCCGCGAGTTCCCGCCGACTTTGCGCGGAGCC CTTCGGCTAGCCTGCCCTTCCCGCCTGAGCTGCCGGCCCGCCGGCCCCTGAGCACCACTCCGACGGAGTC CCCCGGCCTTTTCACGGTGGCCGCTCCAGCCCCCGGAGCGCCGTCTCCTCCCGCCACGCTGGCGCACCTC CTTCCCGCCCCGGCGATGTACAGCCTGCTGGAGACTGAACTCAAGAACCCCGTGGGGCCGCCCACCCCAG CCGCGGGCACCGGCGTCCCCGCAGCTCCCGGCGCTGCAGGCAAGAGTGGCGCGAACCCAGCCGGCGGAGC GAACGCAGGCAACGGGGGCAGCGGGGGCGCGAACGGCGGCGGTGGTGGTGGTGGCGGCGGGGGCAGCGAC CAGGACCGCGTCAAGCGACCCATGAACGCGTTCATGGTGTGGTCCCGCGGGCAGCGGCGCAAGATGGCCC TGGAGAACCCCAAGATGCACAACTCCGAGATCAGCAAGCGCTTGGGCGCCGACTGGAAACTGCTGACCGA TGCGGAGAAGCGGCCGTTCATCGACGAGGCCAAGCGACTGCGTGCGGTGCACATGAAGGAGTACCCGGAC TACAAGTACCGGCCCCGCCGCAAGACCAAGACGCTGCTCAAGAAGGACAAGTACTCGCTGCCCGGCGGCC TCCTGCCCCCGGGCGCCGCCGCAGCCGCCGCCGCTGCCGCCGCAGCCGCCGCCGCCAGCAGCCCGGTGGG CGTGGGCCAGCGCCTGGACACGTACACGCACGTGAACGGCTGGGCCAACGGCGCCTACTCGCTCGTGCAG GAGCAGCTGGGCTACGCGCAGCCCCCGAGCATGAGCAGCCCGCCGCCGCCACCCGCGCTGCCTCAGATGC ACCGCTACGACATGGCCGGCCTGCAGTACAGCCCCATGATGCCACCCGGCGCCCAGAGCTACATGAACGC CGCCGCCGCCGCTGCCGCCGCCTCGGGCTACGGGGGCATGGCGCCCTCCGCCGCGGCCGCCGCCGCCGCC GCCTACGGGCAGCAGCCCGCCACCGCTGCCGCCGCGGCCGCCGCCGCCGCCGCCATGAGCCTGGGCCCCA TGGGCTCCGTGGTGAAGTCGGAGCCCAGCTCTCCGCCGCCCGCCATCGCTTCGCACTCGCAGCGCGCGTG CCTCGGCGACCTGCGCGACATGATCAGCATGTACCTGCCACCTGGCGGGGACGCGGCCGACGCCGCTTCT CCGCTCCCAGGCGGCCGGCTGCACGGCGTGCACCAGCACTACCAGGGCGCCGGGACTGCGGTCAATGGAA CGGTGCCGCTGACCCACATCTGA
Translation (450 aa): MRPARENASGERSPRVPADFARSPSASLPFPPELPARRPLSTTPTESPGLFTVAAPAPGAPSPPATLAHL LPAPAMYSLLETELKNPVGPPTPAAGTGVPAAPGAAGKSGANPAGGANAGNGGSGGANGGGGGGGGGGSD QDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPD YKYRPRRKTKTLLKKDKYSLPGGLLPPGAAAAAAAAAAAAAASSPVGVGQRLDTYTHVNGWANGAYSLVQ EQLGYAQPPSMSSPPPPPALPQMHRYDMAGLQYSPMMPPGAQSYMNAAAAAAAASGYGGMAPSAAAAAAA AYGQQPATAAAAAAAAAAMSLGPMGSVVKSEPSSPPPAIASHSQRACLGDLRDMISMYLPPGGDAADAAS PLPGGRLHGVHQHYQGAGTAVNGTVPLTHI
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