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Report for CCDS30112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30112.1 Public Mus musculus X Slc25a14 23 108 98 CCDS HistoryNCBI Gene:20523Re-query CCDS DB by CCDS ID:30112.1Re-query CCDS DB by GeneID:20523See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30112.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033431.13 ENSMUSP00000033431.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033431.13Link to Ensembl Protein Viewer:ENSMUSP00000033431.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033431Re-query CCDS DB by Protein ID:ENSMUSP00000033431
Original member NCBI NM_001359136.1 NP_001346065.1 Updated not alive Link to Nucleotide Sequence:NM_001359136.1Link to Protein Sequence:NP_001346065.1Re-query CCDS DB by Nucleotide ID:NM_001359136Re-query CCDS DB by Protein ID:NP_001346065
Current member NCBI NM_001359136.2 NP_001346065.1 Accepted alive Link to Nucleotide Sequence:NM_001359136.2Link to Protein Sequence:NP_001346065.1Re-query CCDS DB by Nucleotide ID:NM_001359136Re-query CCDS DB by Protein ID:NP_001346065Link to BLAST:NP_001346065.1
Original member NCBI NM_011398.3 NP_035528.1 Updated not alive Link to Nucleotide Sequence:NM_011398.3Link to Protein Sequence:NP_035528.1Re-query CCDS DB by Nucleotide ID:NM_011398Re-query CCDS DB by Protein ID:NP_035528
Current member NCBI NM_011398.4 NP_035528.1 Accepted alive Link to Nucleotide Sequence:NM_011398.4Link to Protein Sequence:NP_035528.1Re-query CCDS DB by Nucleotide ID:NM_011398Re-query CCDS DB by Protein ID:NP_035528Link to BLAST:NP_035528.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346065.1 322 Q9Z2B2-2 322 100% 0 0
NP_035528.1 322 Q9Z2B2-2 322 100% 0 0

Chromosomal Locations for CCDS 30112.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48624132 48624197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48629252 48629345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48630889 48631036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48634757 48634851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48637390 48637475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48640235 48640330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48651930 48652054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48653367 48653502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48660689 48660769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48661883 48661924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGGGTATCTTTCCCGGAATAATCCTAATTTTTCTAAGGGTGAAGTTTGCAACGGCGGCAGTGATTCATC
AGAAAAGTTCCACTTTAAGCCATGAGATGTCTGGTCTGAACTGGAAACCTTTTGTGTATGGCGGCCTTGC
CTCTATTGTTGCCGAGTTCGGCACTTTCCCTGTGGATCTTACTAAAACACGGCTGCAAGTCCAAGGCCAG
AGTATCGATGTTCGTTTCAAAGAAATAAAATATAGAGGGATGTTTCATGCCTTGTTCCGAATCTATAAAG
AAGAAGGGATCTTGGCTCTGTATTCAGGAATTGCCCCTGCGTTACTAAGACAGGCATCATATGGCACCAT
CAAAATTGGTATTTATCAAAGCTTGAAGCGATTATTTGTAGAACGTTTGGAAGATGAGACTCTCCTAATT
AACATGATCTGTGGGGTAGTGTCAGGAGTGATTTCCTCTACTATTGCCAATCCCACTGATGTTCTAAAGA
TTCGAATGCAGGCTCAAGGAAGTTTGTTCCAAGGGAGCATGATTGGCAGCTTCATTGACATATACCAGCA
AGAAGGTACCAGGGGTCTGTGGAGGGGTGTGGTCCCAACTGCTCAGCGTGCTGCAATCGTTGTGGGAGTA
GAGCTGCCCGTTTATGATATTACCAAGAAGCACCTGATAGTTTCAGGAATGCTGGGAGACACAATTTTAA
CACACTTTGTTTCCAGTTTCACCTGTGGTTTGGCTGGGGCTCTGGCATCTAACCCTGTGGATGTGGTGAG
AACTCGAATGATGAATCAGAGGGCAATAGTGGGACATGTGGACCTCTACAAGGGTACTTTGGATGGTATT
TTAAAGATGTGGAAGCATGAGGGATTTTTTGCACTCTATAAAGGATTTTGGCCAAACTGGCTTCGACTTG
GACCCTGGAACATCATTTTTTTTATTACCTATGAGCAGCTCAAGAGGCTTCAGATCTAA

Translation (322 aa):
MGIFPGIILIFLRVKFATAAVIHQKSSTLSHEMSGLNWKPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQ
SIDVRFKEIKYRGMFHALFRIYKEEGILALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLI
NMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQGSMIGSFIDIYQQEGTRGLWRGVVPTAQRAAIVVGV
ELPVYDITKKHLIVSGMLGDTILTHFVSSFTCGLAGALASNPVDVVRTRMMNQRAIVGHVDLYKGTLDGI
LKMWKHEGFFALYKGFWPNWLRLGPWNIIFFITYEQLKRLQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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