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Report for CCDS29883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29883.1 Public Mus musculus 19 Nt5c2 23 108 98 CCDS HistoryNCBI Gene:76952Re-query CCDS DB by CCDS ID:29883.1Re-query CCDS DB by GeneID:76952See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168536.8 ENSMUSP00000129126.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168536.8Link to Ensembl Protein Viewer:ENSMUSP00000129126.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168536Re-query CCDS DB by Protein ID:ENSMUSP00000129126
Original member Current member EBI ENSMUST00000236501.1 ENSMUSP00000158280.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236501.1Link to Ensembl Protein Viewer:ENSMUSP00000158280.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236501Re-query CCDS DB by Protein ID:ENSMUSP00000158280
Original member NCBI NM_029810.4 NP_084086.3 Updated not alive Link to Nucleotide Sequence:NM_029810.4Link to Protein Sequence:NP_084086.3Re-query CCDS DB by Nucleotide ID:NM_029810Re-query CCDS DB by Protein ID:NP_084086
Current member NCBI NM_029810.5 NP_084086.3 Accepted alive Link to Nucleotide Sequence:NM_029810.5Link to Protein Sequence:NP_084086.3Re-query CCDS DB by Nucleotide ID:NM_029810Re-query CCDS DB by Protein ID:NP_084086Link to BLAST:NP_084086.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084086.3 560 Q3V1L4 560 100% 0 0

Chromosomal Locations for CCDS 29883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46888818 46889051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46889770 46889946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46890069 46890129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46890246 46890297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46891509 46891679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46892235 46892301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46892505 46892612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46893519 46893560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46894521 46894604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46896508 46896561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46897576 46897669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46898622 46898679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46898803 46898894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46903878 46903973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46904975 46905092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46924262 46924335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46950846 46950946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCT
TGAAAAAGTACCGTCGAGAAGCCTATCACCGGGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAA
GTGTTTTGGTTTTGATATGGATTATACCCTAGCCGTGTACAAGTCTCCAGAATATGAATCCCTTGGCTTT
GAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTA
CATTCCCTACCAGAGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAA
CCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAGGACCAGAAACTAGAGAGCAGTATCCAAATAAA
TTTATCCAACGAGATGACACTGAACGGTTTTACATTCTGAACACACTATTCAATCTCCCAGAGACCTACC
TGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAGTTGTGACACAGGATTTAAAGA
TGGGGACCTCTTCATGTCCTACCGTAGCATGTTCCAGGACGTAAGAGACGCAGTGGACTGGGTCCATTAC
AAGGGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGATGGCAAGTTGCCGT
TGCTTCTGAGCCGAATGAAGGAAGTAGGGAAAGTGTTTCTGGCTACTAACAGTGACTATAAGTACACAGA
TAAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAGCCCGGGAGCTCCCACCGGCCGTGGCAG
TCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTC
AGGTGGACACTAAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTA
CTCAGGGGGTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGA
GATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTG
AGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTTCACTCTTTGAAGAACTTCAAAGCTTGGATAT
TTTCTTGGCTGAACTCTACAAGCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAG
AGACGGATTAAGAAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCG
GCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAA
CCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGATGCCGCACGAGTCAACGGTG
GAACACACGCATGTGGATATCAATGAGATGGAGTCCCCTCTCGCCACCCGGAACCGCACGTCAGTGGATT
TCAAAGACACTGACTATAAGCGACACCAGCTTACAAGGTCCATTAGTGAGATCAAGCCCCCCAACCTCTT
CCCGCTGGCCCCCCAGGAGATCACACACTGCCATGATGAAGATGATGATGAAGAGGAAGAAGAGGAAGAA
TAG

Translation (560 aa):
MTTSWSDRLQNAADVPANMDKHALKKYRREAYHRVFVNRSLAMEKIKCFGFDMDYTLAVYKSPEYESLGF
ELTVERLVSIGYPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNK
FIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSCDTGFKDGDLFMSYRSMFQDVRDAVDWVHY
KGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGKVFLATNSDYKYTDKIMTYLFDFPHGPKPGSSHRPWQ
SYFDLILVDARKPLFFGEGTVLRQVDTKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIG
DHIFGDILKSKKRQGWRTFLVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQ
RRIKKVTHDMDMCYGMMGSLFRSGSRQTLFASQVMRYADLYAASFINLLYYPFSYLFRAAHVLMPHESTV
EHTHVDINEMESPLATRNRTSVDFKDTDYKRHQLTRSISEIKPPNLFPLAPQEITHCHDEDDDEEEEEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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