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Report for CCDS2987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2987.1 Public Homo sapiens 3 TMEM39A 24 110 108 CCDS HistoryNCBI Gene:55254Re-query CCDS DB by CCDS ID:2987.1Re-query CCDS DB by GeneID:55254See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2987.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319172.10 ENSP00000326063.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319172.10Link to Ensembl Protein Viewer:ENSP00000326063.5Re-query CCDS DB by Nucleotide ID:ENST00000319172Re-query CCDS DB by Protein ID:ENSP00000326063
Original member Current member NCBI NM_018266.3 NP_060736.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018266.3Link to Protein Sequence:NP_060736.1Re-query CCDS DB by Nucleotide ID:NM_018266Re-query CCDS DB by Protein ID:NP_060736Link to BLAST:NP_060736.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060736.1 488 Q9NV64-1 488 100% 0 0

Chromosomal Locations for CCDS 2987.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 119431981 119432214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119434762 119434882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119436791 119436978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119437755 119438103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119447018 119447172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119452447 119452530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119458018 119458240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119461962 119462074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGCCCGGTGGAAGGAGGGGCCCTAGTCGGCAACAGCTAAGCCGTTCAGCTTTACCTTCTTTGCAGACTT
TGGTTGGTGGAGGCTGTGGCAATGGAACAGGCTTGAGAAACAGGAATGGTAGTGCTATTGGCCTTCCAGT
CCCACCTATCACAGCCTTAATCACCCCAGGTCCTGTTCGTCATTGCCAAATTCCTGACTTGCCTGTGGAT
GGGAGCCTACTCTTTGAATTCCTTTTTTTCATCTACCTGTTGGTTGCTCTTTTCATTCAGTACATCAACA
TTTATAAAACAGTGTGGTGGTATCCTTACAATCATCCTGCTTCTTGTACATCACTGAATTTTCATCTCAT
TGATTATCATCTGGCAGCATTCATCACAGTGATGCTTGCGAGGAGGCTTGTATGGGCTCTCATCTCAGAG
GCTACTAAGGCAGGTGCAGCATCAATGATTCACTACATGGTTCTGATATCAGCTCGCTTGGTACTACTCA
CTTTGTGTGGATGGGTACTTTGTTGGACCCTCGTCAATCTCTTTCGAAGCCATTCAGTCCTCAATCTCCT
TTTCCTTGGCTACCCGTTTGGTGTTTATGTTCCTCTTTGCTGTTTTCATCAAGATAGTAGAGCACATCTT
CTTCTCACAGACTACAACTATGTGGTTCAGCACGAGGCAGTAGAGGAAAGTGCCTCGACTGTGGGAGGCT
TGGCCAAATCCAAAGACTTTCTCTCCTTGTTGCTGGAGTCGCTAAAAGAACAGTTTAATAATGCCACACC
CATCCCCACCCACAGTTGTCCCCTATCTCCAGACCTCATTCGCAATGAAGTAGAATGTCTGAAAGCAGAT
TTCAACCACAGAATCAAGGAGGTTCTCTTCAACTCCCTCTTCAGTGCCTACTATGTTGCATTTCTCCCCC
TGTGTTTTGTGAAGAGTACCCAGTACTATGACATGCGCTGGTCATGTGAGCACCTCATTATGGTGTGGAT
CAATGCTTTTGTCATGCTCACCACGCAACTGTTGCCATCCAAATACTGTGATTTGCTACATAAATCAGCT
GCTCACCTGGGCAAGTGGCAGAAGTTGGAACATGGGTCCTACAGCAATGCTCCACAGCACATTTGGTCAG
AAAATACAATATGGCCTCAAGGGGTGCTGGTGCGGCACAGCAGATGTTTATATAGAGCCATGGGGCCTTA
CAACGTGGCAGTGCCTTCAGATGTATCTCATGCCCGCTTTTATTTCTTATTTCATCGACCATTAAGGCTG
TTAAATCTGCTCATCCTTATTGAGGGCAGTGTCGTCTTCTATCAGCTCTATTCCTTGCTGCGGTCGGAGA
AGTGGAACCACACACTTTCCATGGCTCTCATCCTCTTCTGCAACTACTATGTTTTATTTAAACTTCTCCG
GGACAGAATAGTATTAGGCAGGGCATACTCCTACCCACTCAACAGTTATGAACTCAAGGCAAACTAA

Translation (488 aa):
MPGGRRGPSRQQLSRSALPSLQTLVGGGCGNGTGLRNRNGSAIGLPVPPITALITPGPVRHCQIPDLPVD
GSLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNFHLIDYHLAAFITVMLARRLVWALISE
ATKAGAASMIHYMVLISARLVLLTLCGWVLCWTLVNLFRSHSVLNLLFLGYPFGVYVPLCCFHQDSRAHL
LLTDYNYVVQHEAVEESASTVGGLAKSKDFLSLLLESLKEQFNNATPIPTHSCPLSPDLIRNEVECLKAD
FNHRIKEVLFNSLFSAYYVAFLPLCFVKSTQYYDMRWSCEHLIMVWINAFVMLTTQLLPSKYCDLLHKSA
AHLGKWQKLEHGSYSNAPQHIWSENTIWPQGVLVRHSRCLYRAMGPYNVAVPSDVSHARFYFLFHRPLRL
LNLLILIEGSVVFYQLYSLLRSEKWNHTLSMALILFCNYYVLFKLLRDRIVLGRAYSYPLNSYELKAN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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